Gene
RNA
| Item | Value |
|---|---|
| gene id | G2111812 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 17404574 ~ 17404836 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: vacuolar protein sorting-associated protein 4B isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2415030 | True | 169 | lncRNA | 0.51 | 2 | 17404574 | 17404836 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508648 | LOC106599664 | coding | downstream | 3545 | 17286956 ~ 17401108 (-) |
| LOC110508647 | LOC106599671 | coding | downstream | 119510 | 17263223 ~ 17285064 (-) |
| LOC110508646 | LOC106599672 | coding | downstream | 144154 | 17254319 ~ 17260420 (-) |
| LOC110508644 | LOC106599691 | coding | downstream | 503010 | 16889532 ~ 16901564 (-) |
| LOC110508642 | NA | coding | downstream | 576297 | 16819286 ~ 16828277 (-) |
| LOC100653470 | LOC106599250 | coding | upstream | 160916 | 17565752 ~ 17622150 (-) |
| LOC110508653 | LOC106599252 | coding | upstream | 224161 | 17628997 ~ 17767340 (-) |
| LOC110508654 | LOC106599254 | coding | upstream | 582226 | 17987062 ~ 18074154 (-) |
| LOC110508658 | LOC106599262 | coding | upstream | 697710 | 18102546 ~ 18175572 (-) |
| LOC110508659 | LOC106599263 | coding | upstream | 785968 | 18190804 ~ 18215071 (-) |
| G2111742 | NA | non-coding | downstream | 151137 | 17233570 ~ 17253437 (-) |
| G2111700 | NA | non-coding | downstream | 225034 | 17179338 ~ 17179540 (-) |
| G2111655 | NA | non-coding | downstream | 249660 | 17153145 ~ 17154914 (-) |
| G2111573 | NA | non-coding | downstream | 441378 | 16958347 ~ 16963196 (-) |
| G2111810 | NA | non-coding | upstream | 3953 | 17408789 ~ 17410656 (-) |
| G2111889 | NA | non-coding | upstream | 122485 | 17527321 ~ 17603063 (-) |
| G2111912 | NA | non-coding | upstream | 162338 | 17567174 ~ 17570878 (-) |
| G2111915 | NA | non-coding | upstream | 165101 | 17569937 ~ 17571600 (-) |
| G2111916 | NA | non-coding | upstream | 167514 | 17572350 ~ 17572631 (-) |
| G2110939 | NA | other | downstream | 604705 | 16799390 ~ 16799869 (-) |
| LOC110508627 | LOC106599725 | other | downstream | 1693645 | 15703333 ~ 15793545 (-) |
| G2109705 | NA | other | downstream | 1800111 | 15603685 ~ 15604463 (-) |
| G2109663 | LOC106599735 | other | downstream | 1849677 | 15539768 ~ 15554897 (-) |
| G2112905 | NA | other | upstream | 1056338 | 18461174 ~ 18461538 (-) |
| G2112922 | NA | other | upstream | 1094705 | 18499541 ~ 18499966 (-) |
| G2113211 | NA | other | upstream | 1252717 | 18657553 ~ 18659728 (-) |
| G2113287 | NA | other | upstream | 1337082 | 18741918 ~ 18742284 (-) |
| G2113320 | LOC100194703 | other | upstream | 1380061 | 18784897 ~ 18785322 (-) |
