G2111810


Basic Information

Item Value
gene id G2111810
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 17408789 ~ 17410656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2415028
TTAATATTACTTTTATTTACATATGCACGGCAGAGGAATTCTGATGACTTTTCCACTCGCTGATATACTGTATCATTCTCTACAAGACATGTTATACAGTAAAGTGAAGACCACACCAAAGACGTACCCAACACCTTGAAATTCTTAAGAATGCCAACACTAAGAGCAGAGATATACAACCTTAAAGCCAGTTTACATGAAATGTGCAAATATATATTCCATAGCATCAATGACAAAATACcaatgtaTATGATCTTGCTACTTGTTTGGAAGGCACATGGTGTGCATTGCCACTTAAAAATGGCCACATCTTAAAAGGTAATAACCAAGTACCTGCTTGGGACTGCATTCCAATGCAATAACAAAAAGGACATGATGCCATGAGGGTGTTCTTTTGTGCCTAAAATGTCAATTTCAGGCTACCCACAAAATTCCATTCACACCAACATATCAGTCGCGTTGTTTCTTCAACACTGTTAGACAGTTTGACTGGATCTCAGTACGGCATCATCTCTTTCTAGTTCTTGTTAGGAAGATCAGCAAAAGGGTTACATGTAGAGTGTGTGGATGGtcagggggaaaaaaagtattgaaTCTGTGACTATATTATAAAGGTTTTTCTGGTCCAGTAATGTTGATGATCCTGACAGTTTGAATCATAATGACAATGAACAGAGTAGCCTTTCTTCTGGAGGGGAAaaacaaatgtatatataaaatatgTCCCAAAGCAACCTCCATCCAGAGTGTGTAAATTATTCTAACCGTAGCCGAAGCCCCACAAATGTCTGTATGTAGAATGACATACAGACGCAGGATCTTAATATGACCAGTTCTTcagagcaggaaaataatcctgcaacaacaggtgttgatacatttttccttagggcaaatcaagtctgacattttaaagtggaaattacaaacttgagAAGTATTTAAAAACCTTAAATACACCagaagtttgcatttcctgcagcaacagagtgatcaaattaagatcctacacctgtacatTTGCTGTGCTTCAAGTATCCAAACCCATGTAATTCTCTTCCCCTTGAGACTGTCATAAATTCCACCAATAATATTTGAAAAATATCCTGTACAAAAAGAAGTGGAATATATGGGTGCTCACACTAAAAAGTTAGGTGCAATTTGATTGAAGGAAATTGGATGGGTAATTGGAAAATTAGCTCAGATATTTATTGGGCAAGTTAAATAAGCACTCTACACAAAGAGAAGCATTCTGATTTTGTTAACATGCTTGTATCGGCAACTTCCAGATCAAACTCTCATTGACTTCAAAGCATGATGTATGCAAATGCTCGAGTTGAGCATTGTTTACATATTAGGATTCAGCCCAAGGTGCTGCACCAATGTTCCTAATTGCCATGTAGCTTTCCATTCACCAATCTAGTCTACCTCAGACATGTGAAGAGATCCATAATCCTTTGGACATGGGGAGCATCTAAGAAAATACCCGTCTTTGTTTAACCCCTTGTGGCCAATGGACCAAGCTCAGTCGAGCCAAAGAAATAGATTACTTAAATGGAGAGGTCcgttctagtaattatatttctattagTAGAGCAGTCATGTGATAAGCCAACAGAGCCTGAGGGGGAGAGTGGGAAAAagacggagaggagagaaggaacacTTGACAATCAATAATATTTGCTTTGGTTTGGCTAAAATGACCCAATTTAGCCCTCCTGTCCAAAGTCCTCTGTGAATTTTCTCAGTTTGTCCAAATCCTGATCATTGACTGTTGGCTTTGTGCTGGTCAGGGATCTCAGC

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2415028 True 1806 lncRNA 0.38 2 17408789 17410656

Neighbor

gene id symbol gene type direction distance location
LOC110508648 LOC106599664 coding downstream 7760 17286956 ~ 17401108 (-)
LOC110508647 LOC106599671 coding downstream 123725 17263223 ~ 17285064 (-)
LOC110508646 LOC106599672 coding downstream 148369 17254319 ~ 17260420 (-)
LOC110508644 LOC106599691 coding downstream 507225 16889532 ~ 16901564 (-)
LOC110508642 NA coding downstream 580512 16819286 ~ 16828277 (-)
LOC100653470 LOC106599250 coding upstream 155096 17565752 ~ 17622150 (-)
LOC110508653 LOC106599252 coding upstream 218341 17628997 ~ 17767340 (-)
LOC110508654 LOC106599254 coding upstream 576406 17987062 ~ 18074154 (-)
LOC110508658 LOC106599262 coding upstream 691890 18102546 ~ 18175572 (-)
LOC110508659 LOC106599263 coding upstream 780148 18190804 ~ 18215071 (-)
G2111812 NA non-coding downstream 3953 17404574 ~ 17404836 (-)
G2111742 NA non-coding downstream 155352 17233570 ~ 17253437 (-)
G2111700 NA non-coding downstream 229249 17179338 ~ 17179540 (-)
G2111655 NA non-coding downstream 253875 17153145 ~ 17154914 (-)
G2111889 NA non-coding upstream 116665 17527321 ~ 17603063 (-)
G2111912 NA non-coding upstream 156518 17567174 ~ 17570878 (-)
G2111915 NA non-coding upstream 159281 17569937 ~ 17571600 (-)
G2111916 NA non-coding upstream 161694 17572350 ~ 17572631 (-)
G2111947 NA non-coding upstream 213720 17624376 ~ 17624594 (-)
G2110939 NA other downstream 608920 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 1697860 15703333 ~ 15793545 (-)
G2109705 NA other downstream 1804326 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 1853892 15539768 ~ 15554897 (-)
G2112905 NA other upstream 1050518 18461174 ~ 18461538 (-)
G2112922 NA other upstream 1088885 18499541 ~ 18499966 (-)
G2113211 NA other upstream 1246897 18657553 ~ 18659728 (-)
G2113287 NA other upstream 1331262 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 1374241 18784897 ~ 18785322 (-)

Expression


Co-expression Network