G2112604 (gs04)


Basic Information

Item Value
gene id G2112604
gene name gs04
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18167839 ~ 18228651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2415917
ATTCAGATTTTACCAAATCATGTGCCAGAACAAGAAATCAGTTGAGAAAGGATAAAACTCCTTCATGAGTCTCACAGGAACTCCACAAATGGATAAGACAGGATTTGGAGCCACACGTCTGAAGAATGTACCATACAACATGATCCAGTAGTGTAAAATCTGaaagttgacatttaaaaacaCTACCTACATAGTAACATTGAAAAAGTGGTACAGAGttgaaaaaaaaatccaggtCAACGTGCATAAAGTACACAAACTAGCAAAATAGGTTTTATTAAGACAATTACACATGCCGCCCAGCCATAGTCGTCAGTGTCCACATGTGCTTTAGTTTATTTCAGTTCGACAGACTGCAGGAAACGCGAGATCAAATGGGGATTTAAAAACAGTTATACTCCCCACTAGAAGACTCAAAAGGGGAAGACAATGCCCTGTCAGCCACCATCTTtcattaaatgtttgtttttatgtTAAACAGATTTAATTCCATGTTAAGTTGACCAGCCAACTTTAAGCCATTTAGAAGGTTAGAATAATTTCAGTGAAAAATTACAACAAATACAGTACTAGTTCAACTTTTCAGCCATTTAGAAAATGAGAATGGAGAAGGGTGGTGGCGAAGGGGATTCAGTCCAGAGGTGTGGCTCTAGTTAGATCTAGTAGTTCACAGGTTCATCTCCTTCCTCACTAAGCAAACAGGTGCGGATTATAGCCTCAGTCACGGCGTACGGGTCACAGTTGGCAGATGGGCGGCGGTCCTCGAAGTAGCCCTTCTTCTCCTGGCCCACAGTGCGAGGGATGCGGATGCTGGCACCGCGGTTGGCCACACCGGCAGAGAACTCGTGGATGTTGGAGGTTTCATGGTGGCCGGTAAGGCGACGGGCATTGTCAAGTCCCCCTTTAGGGTCATAGGCACGGATGTGGTAGCTATGCCTCTTCCCCAGCCTTTCAATGGACTCCTCAATGGCCCTGGAGCAGTGAGAAGGCGAGATTAGTTCATCACAGAAAAGCTCACAGGTGGTCAACACCATCTGCTTTGCCTTAAGAGCATTCTAATAAGTCTGGGTTTACTCCACATCCAAAAGCATAGATGGGTGCAATTGAATAATTACGACTACTGATTAAACCTAGTATGAACACATCTTCACATGATCCAGTACTCACTTCAAACCACCCTCTTCCCTCATCTCTTTTGTGCTGAAATTGGTGTGGCATCCAGCGCCGTTCCAGTTTCCAGTGATGGGCTTGGGGTCAAATGAGGCCACCACACCAAAGTCCTCACACACCCGGTGGAGAATGAACCTAGCTGCCCAAAGGTGATCACCCATGCTGATGCCTTCACAAGGGCCAACCTGGAACTCCCACTAGAAAGACAAAAACAGTGTTCACGTACATAAGTCTCATTGCATAGGATCAGCCATTAGAcgagcaaaaaaaataaatgcatACACACAAGTAAAATTGTGCTTACCTGTGCAGGCATGACTTCAGCATTGGTTCCACAGATCATGACCCCAGCATACAGGCAGGCTCTGTAGTGGGCTTCCACAATATCTCTACCgtaggccatgaaatacatccacaggtacacctccaattgactcaaatgatgtcatttagcctatcagaagcttctaaagccatgatatcatttgctggaattttccaagctgtttaaagacacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctctgtaaacaattgttggaaaattacttgtgtcatgcataaagtaggtgtcctaaccgacttgccaaaactatagtctgttaacaagaaatttgtggaattgtTGAAGTGTATGTAAGTGtatgta
>TU2415916
ATTCAGATTTTACCAAATCATGTGCCAGAACAAGAAATCAGTTGAGAAAGGATAAAACTCCTTCATGAGTCTCACAGGAACTCCACAAATGGATAAGACAGGATTTGGAGCCACACGTCTGAAGAATGTACCATACAACATGATCCAGTAGTGTAAAATCTGaaagttgacatttaaaaacaCTACCTACATAGTAACATTGAAAAAGTGGTACAGAGttgaaaaaaaaatccaggtCAACGTGCATAAAGTACACAAACTAGCAAAATAGGTTTTATTAAGACAATTACACATGCCGCCCAGCCATAGTCGTCAGTGTCCACATGTGCTTTAGTTTATTTCAGTTCGACAGACTGCAGGAAACGCGAGATCAAATGGGGATTTAAAAACAGTTATACTCCCCACTAGAAGACTCAAAAGGGGAAGACAATGCCCTGTCAGCCACCATCTTtcattaaatgtttgtttttatgtTAAACAGATTTAATTCCATGTTAAGTTGACCAGCCAACTTTAAGCCATTTAGAAGGTTAGAATAATTTCAGTGAAAAATTACAACAAATACAGTACTAGTTCAACTTTTCAGCCATTTAGAAAATGAGAATGGAGAAGGGTGGTGGCGAAGGGGATTCAGTCCAGAGGTGTGGCTCTAGTTAGATCTAGTAGTTCACAGGTTCATCTCCTTCCTCACTAAGCAAACAGGTGCGGATTATAGCCTCAGTCACGGCGTACGGGTCACAGTTGGCAGATGGGCGGCGGTCCTCGAAGTAGCCCTTCTTCTCCTGGCCCACAGTGCGAGGGATGCGGATGCTGGCACCGCGGTTGGCCACACCGGCAGAGAACTCGTGGATGTTGGAGGTTTCATGGTGGCCGGTAAGGCGACGGGCATTGTCAAGTCCCCCTTTAGGGTCATAGGCACGGATGTGGTAGCTATGCCTCTTCCCCAGCCTTTCAATGGACTCCTCAATGGCCCTGGAGCAGTGAGAAGGCGAGATTAGTTCATCACAGAAAAGCTCACAGGTGGTCAACACCATCTGCTTTGCCTTAAGAGCATTCTAATAAGTCTGGGTTTACTCCACATCCAAAAGCATAGATGGGTGCAATTGAATAATTACGACTACTGATTAAACCTAGTATGAACACATCTTCACATGATCCAGTACTCACTTCAAACCACCCTCTTCCCTCATCTCTTTTGTGCTGAAATTGGTGTGGCATCCAGCGCCGTTCCAGTTTCCAGTGATGGGCTTGGGGTCAAATGAGGCCACCACACCAAAGTCCTCACACACCCGGTGGAGAATGAACCTAGCTGCCCAAAGGTGATCACCCATGCTGATGCCTTCACAAGGGCCAACCTGGAACTCCCACTAGAAAGACAAAAACAGTGTTCACGTACATAAGTCTCATTGCATAGGATCAGCCATTAGAcgagcaaaaaaaataaatgcatACACACAAGTAAAATTGTGCTTACCTGTGCAGGCATGACTTCAGCATTGGTTCCACAGATCATGACCCCAGCATACAGGCAGGCTCTGTAGTGGGCTTCCACAATATCTCTACCGTAGGCCTTGTCAGATCCCACTCCACAGTAATAGGACCTTGTGGGCCAGGGAAGCCGTTGTTGGGCCAGCCAAATGGGTGTCCATCCGTGCCCAAAATGGTGTACTCTTGCTCCATGCCAAACCAAGGGACCTGGTTCTCAACCATGTCCATAACTTTATTACACGTCAAACGAAGGTTGGTTTCTGCAGGTTTGCGGTTGTACTTCAGCACTTCACACAGGACCAGTTTGTTGGGGTCTTTGCGGAAAGGATCTCTGAACATTGCAGAAGGAATCAAATACATATCACTGTTTGAGCCCTCAGACTGGTAGGTGCTAGAGCCATCAAAGTTCCATTCAGGCAGTTCTTCAATGCACTTGGGCTCCGAATCCAGCGTTCTGGTCTTACAGCGGAGTCCCTCTCCGGTTCCATCGATCCAGACATACATGATTTGGACTTTGTCTCCCTGAGGGAGGTCCATGTACTGCTGTTTGACAGCCTTACTCAGTTCTGCGCTGGAGGACGTAGCCATATTATTTGTTATAAAACACCTGTAAAAACGAGAAAACAGATATAAAAACGAAAGGACTGGCAGGTCCAATGTAATGTTGAAAATTTTCCCGATAGttgttctctcattctctcggC
>TU2415918
ATTCAGATTTTACCAAATCATGTGCCAGAACAAGAAATCAGTTGAGAAAGGATAAAACTCCTTCATGAGTCTCACAGGAACTCCACAAATGGATAAGACAGGATTTGGAGCCACACGTCTGAAGAATGTACCATACAACATGATCCAGTAGTGTAAAATCTGaaagttgacatttaaaaacaCTACCTACATAGTAACATTGAAAAAGTGGTACAGAGttgaaaaaaaaatccaggtCAACGTGCATAAAGTACACAAACTAGCAAAATAGGTTTTATTAAGACAATTACACATGCCGCCCAGCCATAGTCGTCAGTGTCCACATGTGCTTTAGTTTATTTCAGTTCGACAGACTGCAGGAAACGCGAGATCAAATGGGGATTTAAAAACAGTTATACTCCCCACTAGAAGACTCAAAAGGGGAAGACAATGCCCTGTCAGCCACCATCTTtcattaaatgtttgtttttatgtTAAACAGATTTAATTCCATGTTAAGTTGACCAGCCAACTTTAAGCCATTTAGAAGGTTAGAATAATTTCAGTGAAAAATTACAACAAATACAGTACTAGTTCAACTTTTCAGCCATTTAGAAAATGAGAATGGAGAAGGGTGGTGGCGAAGGGGATTCAGTCCAGAGGTGTGGCTCTAGTTAGATCTAGTAGTTCACAGGTTCATCTCCTTCCTCACTAAGCAAACAGGTGCGGATTATAGCCTCAGTCACGGCGTACGGGTCACAGTTGGCAGATGGGCGGCGGTCCTCGAAGTAGCCCTTCTTCTCCTGGCCCACAGTGCGAGGGATGCGGATGCTGGCACCGCGGTTGGCCACACCGGCAGAGAACTCGTGGATGTTGGAGGTTTCATGGTGGCCGGTAAGGCGACGGGCATTGTCAAGTCCCCCTTTAGGGTCATAGGCACGGATGTGGTAGCTATGCCTCTTCCCCAGCCTTTCAATGGACTCCTCAATGGCCCTGGAGCAGTGAGAAGGCGAGATTAGTTCATCACAGAAAAGCTCACAGGTGGTCAACACCATCTGCTTTGCCTTAAGAGCATTCTAATAAGTCTGGGTTTACTCCACATCCAAAAGCATAGATGGGTGCAATTGAATAATTACGACTACTGATTAAACCTAGTATGAACACATCTTCACATGATCCAGTACTCACTTCAAACCACCCTCTTCCCTCATCTCTTTTGTGCTGAAATTGGTGTGGCATCCAGCGCCGTTCCAGTTTCCAGTGATGGGCTTGGGGTCAAATGAGGCCACCACACCAAAGTCCTCACACACCCGGTGGAGAATGAACCTAGCTGCCCAAAGGTGATCACCCATGCTGATGCCTTCACAAGGGCCAACCTGGAACTCCCACTGTGCAGGCATGACTTCAGCATTGGTTCCACAGATCATGACCCCAGCATACAGGCAGGCTCTGTAGTGGGCTTCCACAATATCTCTACCGTAGGCCTTGTCAGATCCCACTCCACAGTAATAGGGACTGTGGGCCAGGGAAGCCGTTGTTGGGCCAGCCAAATGGGTGTCCATCCGTGCCCAAAATGGTGTACTCTTGCTCCATGCCAAACCAAGGGACCTGGTTCTCAACCATGTCCATAACTTTATTACACGTCAAACGAAGGTTGGTTTCTGTGCAAAGAATGTACCTATATTATATACTGAAGTAAAAATAGATTTAAAAAGCTTAGCTAGACAGATGCACACCAAGATTTAGAAGTTACCTGCAGGTTTGCGGTTGTACTTCAGCACTTCACACAGGACCAGTTTGTTGGGGTCTTTGCGGAAAGGATCTCTGAACATTGCAGAAGGAATCAAATACATATCACTGTTTGAGCCCTCAGACTGGTAGGTGCTAGAGCCATCAAAGTTCCATTCAGGCAGTTCTACAGAATTAAGGCAAAGAAGGAGTTAGTTGTTGAGTGACTTGCGTAAACTAGGCAGGCTAGGCTACAAAACTCATAAATCTCCTGGAACTTTGTGTCAAATGTCAACCAACAACCATTGTTTACCTTCAATGCACTTGGGCTCCGAATCCAGCGTTCTGGTCTTACAGCGGAGTCCCTCTCCGGTTCCATCGATCCAGACATACATGATTTGGACTTTGTCTCCCTGAGGGAGGTCCATGTACTGCTGTTTGACAGCCTTACTCAGTTCTGCGCTGGAGGACGTAGCCATATTATTTGTTATAAAACACCTAGGGAGATACAAAAACGTCAACAGGTATGATGAGTTTACACGTCAAAGCCGCCACCTCGTTGACCACAATTGGAAGATGTGTTGCATAACAGCTAACTCAGAGACCAGATTGCTCATTGTTCCAGAACTAATCAAAGAATAAATGCGAAGACACATCTTAGGCATTTTATTTCATTGAAATCCATGGCAAGAGTCAAAACAGATGGTTTTCGCCACTTCAAGTAGAGCAAATCTGACAAAAATAAAATTCTGCCATATTGATCACAGCGTGTTAATAAGATGACCATTCCTGGATTGGTAGGCTACAGACCAACAGAATCCATGTTACCCTAACTAATAATCCCATTTCCCAACAACATtttatcatcatcatcctcctttACGACT

Function

NR:

description
glutamine synthetase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2415917 False 1883 lncRNA 0.43 2 18167839 18228651
TU2415916 False 2192 lncRNA 0.46 5 18225370 18228651
TU2415918 True 2594 lncRNA 0.45 3 18225836 18228651

Neighbor

gene id symbol gene type direction distance location
LOC110508654 LOC106599254 coding downstream 93685 17987062 ~ 18074154 (-)
LOC110508653 LOC106599252 coding downstream 400499 17628997 ~ 17767340 (-)
LOC100653470 LOC106599250 coding downstream 545689 17565752 ~ 17622150 (-)
LOC110508648 LOC106599664 coding downstream 766810 17286956 ~ 17401108 (-)
LOC110508647 LOC106599671 coding downstream 882775 17263223 ~ 17285064 (-)
LOC110508660 LOC105019197 coding upstream 67789 18295288 ~ 18300984 (-)
cdc20 cdc20 coding upstream 132413 18361064 ~ 18365995 (-)
fitm1l LOC106599271 coding upstream 144002 18372653 ~ 18375659 (-)
LOC110508665 LOC106599272 coding upstream 200173 18428824 ~ 18481333 (-)
LOC110508666 LOC106599276 coding upstream 255694 18484345 ~ 18517197 (-)
G2112324 NA non-coding downstream 214770 17949564 ~ 17953069 (-)
G2112232 NA non-coding downstream 350998 17816606 ~ 17816841 (-)
G2112062 NA non-coding downstream 356150 17811102 ~ 17811689 (-)
G2112035 NA non-coding downstream 377521 17790031 ~ 17790318 (-)
G2112018 NA non-coding downstream 390553 17777055 ~ 17777286 (-)
G2112605 NA non-coding upstream 2958 18231609 ~ 18231993 (-)
G2112879 NA non-coding upstream 153582 18382233 ~ 18382467 (-)
G2112880 NA non-coding upstream 153961 18382612 ~ 18382899 (-)
G2112888 NA non-coding upstream 162612 18391263 ~ 18391594 (-)
LOC110508646 LOC106599672 other downstream 910444 17254319 ~ 17260420 (-)
G2110939 NA other downstream 1367970 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 2456910 15703333 ~ 15793545 (-)
G2109705 NA other downstream 2563376 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 2612942 15539768 ~ 15554897 (-)
G2112905 NA other upstream 232523 18461174 ~ 18461538 (-)
G2112922 NA other upstream 270890 18499541 ~ 18499966 (-)
G2113211 NA other upstream 428902 18657553 ~ 18659728 (-)
G2113287 NA other upstream 513267 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 556246 18784897 ~ 18785322 (-)

Expression


Co-expression Network