G2112867 (LOC105009935)


Basic Information

Item Value
gene id G2112867
gene name LOC105009935
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18413562 ~ 18420017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2416206
TGATATTGAAATACTAGAATTACAACACTTGTTTTTATAATTATATTATGCACACCAAAAATTAAGATATTCAAGAATCAGAAAACGAACTTAGCCTCACTAACCTTGGAACCAACATCACGGCTCTTGGCACGCAGCTTGTTGACCTGAGACTCAGCGATGTCGGCCCTTTCCTCAGCCTCGTCCAGCTCATGTTGTATTTTGCGGAACTTGCCCAGATGGTTGTTGGCTTGCTCCTCGCTTCCTCGGCAGATCTCTTGTAGGCTTTCACTTTCAGTTGCAGCTTATCCACAAGGTCTTGGAGGCGGGTCATATTCTTGCGGTCCTCATCAGTCTGTAAAGACAGAAGCCATAGCGAATAGCAGTCAGTAGATGTAAAGCACACATCTATGCATGCCTGTCATGGTAACAACAATATAAATAAAAGATCACCTGGTAGGTGAGTTCCTTGATACGCCTCTCATATTTCCGAATTCCTTTGATTGCATCAGCACCCTTCTTCTGCTCACCCTCGACCTCATTCTCCAGCTCCCTCACCTGTCATAACATAAAAATAACATCTAGGCTATGTAACAGGGACCATTATTGCTGTTTTGCATATGGCTCTAATGCACAGTATGTGCATCTACTGTAAAAAGCATACACTCACCCTGTTCTCCAGCTTCTGAACCTGCTTCTTGCCCCCCTTCATGGCGATTTGTTCAGCCTCATCCAGGCGGTGCTGCAGGTCCTTGATGGTCTGCTCCATGTTCTTCTTCATTCGCTCCAGGTGAGAACTGGTGTCCTGCTCCTTCTTCAACTCCTCTGCCATCATGGCAGCATCAGTAATGGCCTTCTTGGCCTTTTCTTCAGCATTTCTGCACTCCTGGACTGCCTCCTCCACCTCAGTCTGAAGCTGGTTTGTGTCGCTCTCCAGCTTCTTCTTTTGGTTCAGCAGGCTGGTGTCTGTGAGTGCAGCAACTGCACCCTCTCACTGATGTCCAGCAGCTCTTGCTCAGCTAGCTTGCGGCCTCTCTCAGTCTGTTCAAGACAGCTTCTTAGCTCCTCCAGCTCTGCCTGCATCAGATTGTTGCGTCTCTCTACAATGGCAATGTTTTCCTTCAGATCATCATTGGAACGAAGAGAGTCATCTAACTGGAGTTGGGCATCCTAGAAGAGAAGACATTTGTATAACGAATTAGTCAATTGCTCATtaaatttacatttacatttgagacATTTAGCCAACACTCCTATCCAGATATAGACCAACAATAATTTACCTTCAGATGAGCATGAACACTCTTTAGCTGTTTCTGGGCCTCTGATGCCTGCCTGTTGGATTGGCTGAGCTGGATTTCCATCTCATTGAGGTCTCCCTCCATTTTCTTTTTCAGTCTGAGGGCCTCAGTCCTGCTCCGGCACTCTGCCTCAAGAGAGCTCTGCAGGGTATCAATGGCCCTCTGCAGATTCCTCTTGGACTGCTCCATCTCCACTTTAGCCAGAGTGAGCTCCAGGTCATCAATGTCCTTCTTTATCTCAGAGCACTCGTCCTCCAGTTTCCTCTTCTTGGCGGTCAGTTCTGCATtcatctcctcttcatcctccagtCTCTCAGTCAGCTCTTTGGATTTAGCTTCCAACTGAATCTTGTGTTTGATCAGTTGTTCACATCTTTCCTCAGCATCGCAAAGATTATCTTGCTCCTATGTTGAAAGGTTTCATTAGCTTAATGACAATTTTCAAGTATTTTTGCAAGGATCACAATTCTGATGCATGTTACTTCATTTATGGGATGATATATTTAACTCACCGCCTGAACTGAAAGCTGTAAGTCATTTTTCTCTTGGAGAAGAGAGACCATTTTCTCCTCTAGTTCCTTCCTGCGAGCCTCAGACTTAGCATAAGCCTCTTTCAGCTTCAAGAACTCTTCCTTCATGTTGGCCATCTCCTTCTCAGACTCAGCAGATTTCAGCAGAGGCTTGATCTTAAAGAATAGCTTCATCCAGGGCCAATTCTTGACCCCCATGAAGGCACGTACATTCCATTGGATCACAAGTAATGCAT
>TU2416207
tagatgtgaatctgattGCGATTTGACTTTATTCTACAGAGTTACTTAGGGCTTTGGATAGACTTCACCACAGCAGAAGGTTTCAGAGGTCCATATGAGAGCTTCACTCTTCATCGTGCCCTTTCTGTGATGATAAAGAAttagggaCTTGGAACCAACATCACGGCTCTTGGCACGCAGCTTGTTGACCTGAGACTCAGCGATGTCGGCCCTTTCCTCAGCCTCGTCCAGCTCATGTTGTATTTTGCGGAACTTGCCCAGATGGTTGTTGGCTTGCTCCTCCTATGACATGGAAACACAACAAGCATCACAGCAAAAGCAGAGACCGATACTATCATACAAGCAAAAGATCCCCAATATTATAGGTAAGTCCACACTTACAGCTTCCTCGGCAGATCTCTTGTAGGCTTTCACTTTCAGTTGCAGCTTATCCACAAGGTCTTGGAGGCGGGTCATATTCTTGCGGTCCTCATCAGTCTGTAAAGACAGAAGCCATAGCGAATAGCAGTCAGTAGATGTAAAGCACACATCTATGCATGCCTGTCATGGTAACAACAATATAAATAAAAGATCACCTGGTAGGTGAGTTCCTTGATACGCCTCTCATATTTCCGAATTCCTTTGATTGCATCAGCACCCTTCTTCTGCTCACCCTCGACCTCATTCTCCAGCTCCCTCACCTGTCATAACATAAAAATAACATCTAGGCTATGTAACAGGGACCATTATTGCTGTTTTGCATATGGCTCTAATGCACAGTATGTGCATCTACTGTAAAAAGCATACACTCACCCTGTTCTCCAGCTTCTGAACCTGCTTCTTGCCCCCCTTCATGGCGATTTGTTCAGCCTCATCCAGGCGGTGCTGCAGGTCCTTGATGGTCTGCTCCATGTTCTTCTTCATTCGCTCCAGGTGAGAACTGGTGTCCTGCTCCTTCTTCAACTCCTCTGCCATCATGGCAGCATCAGTAATGGCCTTCTTGGCCTTTTCTTCAGCATTTCTGCACTCCTGGACTGCCTCCTCCACCTCAGTCTGAAGCTGGTTTGTGTCGCTCTCCAGCTTCTTCTTTTGTCTGTTCAAGACAGCTTCTTAGCTCCTCCAGCTCTGCCTGCATCAGATTGTTGCGTCTCTCTACAATGGCAATGTTTTCCTTCAGATCATCATTGGAACGAAGAGAGTCATCTAACTGGAGTTGGGCACCTTCAGATGAGCATGAACACTCTTTAGCTGTTTCTGGGCCTCTGATGCCTGCCTGTTGGATTGGCTGAGCTGGATTTCCATCTCATTGAGGTCTCCCTCCATTTTCTTTTTCAGTCTGAGGGCCTCAGTCCTGCTCCGGCACTCTGCCTCAAGAGAGCTCTGCAGGGTATCAATGGCCCTCTGCAGATTCCTCTTGGACTGCTCCATCTCCTTCTCAGACTCAGCAGATTTCAGCAGAGGCTTGATCTTAAAGAATAGCTTCATCCAGGGCCAATTCTTGACCCCCATGAAGGCACGTACATTCCATTGGATCACAAGTAATGCAT

Function

NR:

description
myosin-6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2416206 False 2046 lncRNA 0.45 4 18413562 18418931
TU2416207 True 1526 lncRNA 0.47 5 18413562 18420017

Neighbor

gene id symbol gene type direction distance location
fitm1l LOC106599271 coding downstream 37903 18372653 ~ 18375659 (-)
cdc20 cdc20 coding downstream 47567 18361064 ~ 18365995 (-)
LOC110508660 LOC105019197 coding downstream 112578 18295288 ~ 18300984 (-)
LOC118944819 LOC106599263 coding downstream 190717 18215198 ~ 18222845 (-)
LOC110508659 LOC106599263 coding downstream 198491 18190804 ~ 18215071 (-)
LOC110508665 LOC106599272 coding upstream 8807 18428824 ~ 18481333 (-)
LOC110508666 LOC106599276 coding upstream 64328 18484345 ~ 18517197 (-)
LOC110508670 LOC106599287 coding upstream 418296 18838313 ~ 18849139 (-)
LOC110508671 LOC106599289 coding upstream 444822 18864839 ~ 18879323 (-)
LOC110508176 LOC106599291 coding upstream 460673 18880690 ~ 18927013 (-)
G2112892 NA non-coding downstream 17047 18396292 ~ 18396515 (-)
G2112888 NA non-coding downstream 21968 18391263 ~ 18391594 (-)
G2112880 NA non-coding downstream 30663 18382612 ~ 18382899 (-)
G2112879 NA non-coding downstream 31095 18382233 ~ 18382467 (-)
G2112910 NA non-coding upstream 56515 18476532 ~ 18477091 (-)
G2112919 NA non-coding upstream 75017 18495034 ~ 18495262 (-)
G2112985 LOC106599276 non-coding upstream 145087 18565104 ~ 18565917 (-)
G2112992 NA non-coding upstream 147949 18567966 ~ 18568246 (-)
G2112995 NA non-coding upstream 150010 18570027 ~ 18570680 (-)
LOC110508646 LOC106599672 other downstream 1156167 17254319 ~ 17260420 (-)
G2110939 NA other downstream 1613693 16799390 ~ 16799869 (-)
LOC110508627 LOC106599725 other downstream 2702633 15703333 ~ 15793545 (-)
G2109705 NA other downstream 2809099 15603685 ~ 15604463 (-)
G2109663 LOC106599735 other downstream 2858665 15539768 ~ 15554897 (-)
G2112905 NA other upstream 41157 18461174 ~ 18461538 (-)
G2112922 NA other upstream 79524 18499541 ~ 18499966 (-)
G2113211 NA other upstream 237536 18657553 ~ 18659728 (-)
G2113287 NA other upstream 321901 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 364880 18784897 ~ 18785322 (-)

Expression


Co-expression Network