G2113263 (LOC106599284)


Basic Information

Item Value
gene id G2113263
gene name LOC106599284
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 18717106 ~ 18720410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2416629
TCCAAATGTAACATACAAAAGTAAAAGCTTTATCATGTATGGAAATGAGTGTCTTTTCTATTTAGCTTGACTACAGTTTGTAGTCAAGGTAAATGTATACAAggtaaatgtataatgtatactGTACTTTGTTGAGTATTTGGAGCCTGGAATTACTCACCACAAGGCCTGATCTCCCAGGAAGACCTGGTGGGCCAGGCAACCCAGCGTCACCCTTCTCTCCTTTCATTCCTTCATAGCCCACGTCCCCTTTTTCTCCCACAAAGCCTTCTGGAAGAACACCATCTGGTTCTCCAGGTGTTCCAGGCAGTCCAACCTCTCCATTTTCTCCTTTAGCACCTCTGTTTCCTCTCCTGCTACCTTGTGATGATCCCCTGCTGCCATTCACTCCATTGAGTCCTATTACTGGTCCTGGGGGACCGGGAGGGCCAGGAGGACCAGGAAGTCCTGGTTGACCAATGGCATCACCCTTGTCTCCCTTCTTCCCTGCCATTCCAAGTCGTCCCGGTCGACCAGGGAACCCGTATTCTCCTTTTTGTCCGGTTGGTCCGATTGGTCCCATGATACCAGCAACTCCAGGGAACCCACGCTCACCC

Function

NR:

description
collagen alpha-1(XVIII) chain-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2416629 True 596 lncRNA 0.49 8 18717106 18720410

Neighbor

gene id symbol gene type direction distance location
LOC110508666 LOC106599276 coding downstream 199909 18484345 ~ 18517197 (-)
LOC110508665 LOC106599272 coding downstream 235773 18428824 ~ 18481333 (-)
fitm1l LOC106599271 coding downstream 341447 18372653 ~ 18375659 (-)
cdc20 cdc20 coding downstream 351111 18361064 ~ 18365995 (-)
LOC110508660 LOC105019197 coding downstream 416122 18295288 ~ 18300984 (-)
LOC110508670 LOC106599287 coding upstream 117903 18838313 ~ 18849139 (-)
LOC110508671 LOC106599289 coding upstream 144429 18864839 ~ 18879323 (-)
LOC110508176 LOC106599291 coding upstream 160280 18880690 ~ 18927013 (-)
LOC110508673 LOC106599588 coding upstream 224838 18945248 ~ 18947188 (-)
LOC118944847 NA coding upstream 237760 18958044 ~ 18966479 (-)
G2112997 NA non-coding downstream 145719 18571103 ~ 18571387 (-)
G2112995 NA non-coding downstream 146426 18570027 ~ 18570680 (-)
G2112992 NA non-coding downstream 148860 18567966 ~ 18568246 (-)
G2112985 LOC106599276 non-coding downstream 151189 18565104 ~ 18565917 (-)
G2112919 NA non-coding downstream 221844 18495034 ~ 18495262 (-)
G2113279 NA non-coding upstream 12093 18732503 ~ 18732756 (-)
G2113282 NA non-coding upstream 14694 18735104 ~ 18735336 (-)
G2113283 NA non-coding upstream 15639 18736049 ~ 18736254 (-)
G2113284 NA non-coding upstream 15957 18736367 ~ 18736662 (-)
G2113286 NA non-coding upstream 19327 18739737 ~ 18740147 (-)
G2113211 NA other downstream 57378 18657553 ~ 18659728 (-)
G2112922 NA other downstream 217140 18499541 ~ 18499966 (-)
G2112905 NA other downstream 255568 18461174 ~ 18461538 (-)
LOC110508646 LOC106599672 other downstream 1459711 17254319 ~ 17260420 (-)
G2110939 NA other downstream 1917237 16799390 ~ 16799869 (-)
G2113287 NA other upstream 21508 18741918 ~ 18742284 (-)
G2113320 LOC100194703 other upstream 64487 18784897 ~ 18785322 (-)
G2113520 LOC106599295 other upstream 286822 19007232 ~ 19011635 (-)
LOC110508678 LOC105024244 other upstream 395680 19116082 ~ 19185326 (-)

Expression


Co-expression Network