G2113953 (LOC106599307)


Basic Information

Item Value
gene id G2113953
gene name LOC106599307
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19321641 ~ 19324735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2417388
ATATTGGTAACGAACAAACAACCCTCAAAACAGTCAATCTTAGATGGTCAGTTTATATTTTTGTAGCAGTTGCAATCTGTTGAGACAATAAAAAGTTTCACAAGTCTTTAAAACACGTTGTCTAGCAACAAAAAGGTTACTGACATAGTTCAATACAGTTTGTCAGGTATGCCTACTTTTCACAAGGACTGTGTCTGTTTTCAGATGCTAACTAATGAGAAGGGGATCATTGTAGGATATGTTGAACAATTTGGGTTTTGCATCATTTATTCATTGTTCAAGCATCTGAAGATGACCGAGAGATTTATAAATGATATGTAGGGGAGACCAGGGCTCGTTGTCACAacttttaagatttttttttttggtaacactttatttggatagtccatctgtagatgctctacagactatctactaaccctagctTTAAATCtcaacccttatcctaaccctaaacttaacctttaccctaCCCTTTAGTCTATCTGTTGATAAACAACTGCTTGCTATCTAAATAAAGTATGACCGTTTTCTCCTCAATTCAGCTTTAGTGTGTAGCCAACCACCATTTTGTTTAACATTGACTGAAAGAAGAGCTATTCATGCATTACTGGGCAATTAAATATTTGTTTATCTAGGTTGCCACATAATGTTATTGAAACATTTCCTCAAAGGAGGGCTCGCTATGGAACCGTGTGTCCTACTGGGGGAAGCCACTTTCATTCCGTTTCCATCTCtttgacagaaacacacacactggatcatCAAGCTCTATTTTTGATAACTGTGCACCCCACTGATATTGAGAAGTTTGAGGGAATCCAACAAGGATCAAGCGGATCATTTTCTTAGAAGGTGGTGAAAGACATAACACCTGTGACAATTTCAATATTCAACGCTAGGGATATGAAGTAGCTACCTTCTGTAAACACCAAAATACAAAAAATCTGTCGCTGTAACTTTTAGTACCTTTTCTTGTCGAAACGAGGTCTGTGACAACTTCCTGTATCTCTGTGGATATTCCGCTCCTGGTCTCCCCTATTTCACATAGCAACAACATGACTACACAAAGTCAACATTTTAGTGTGTAGACCAGAAAATGAAGgtgaacaaatatatatttttttacaagtcTCTTCCATAATGTTGCTGCTTTAAGTGACATCCACATCTGCACATaaaaagtatatatttatatttatataatatatatattcatactCTATTAACAGTCTACCATGAACATGATTGCCAACCCTCTctggaaaaaaaaacacattgttcTCAAACATTGATTATTTTACAACACAGACCCAACTAATTTGTACATCTTTGGAGGGAATTAAGCTCTCAAAGATCTAATTTTCGTCTCCTGGTAATGTTCCAGTCTTGTTACAGTGTATATATAGCTTTATTCCATTAAAACACGTTTAAAAAAAGCATTTACAAACTGGGATTGTTAGAACCAACGACTTGCTGTTGAATGTAAACTTCAACAGAAGTTCAACGTTACCCCTCGGCTTGGAGATAAAACATGTTTGGCACATTTAAAAATGGACCATGAGCACAGTTCACTTGGAGGCGTGTGGAGGAACAAACTTGTTTTCATGTAGATATGGTTGGACAAACAAAATGACATGGCGTGTAGGAAATCAAAAGTATTTTGAGTATATCTACAGTCCTCCGTAAACTGTTTTAGGCAGTGGAAGAGCACCAAGGGAGTAGAATGATGCTGTTGAGATGCTTAGTTCCACCAATTCACATCAGATTAGCCATAACTTGAACATTATTTCTTAATTTTGCTGCTAAAACACATTTGCTcgtatttgtttgtttgtgcgcAGACATTGTACCACTCCGTTCTCCCCCCAGAATGTAACAGACAGGTTGACGTTCTGTTGAGACACCGAGGGAAGGGACACAGGTCTTTGTGTAATATACACAATGCActtgtatctctgtaatgtacatCAAATACTTAACACCAGAATTCGGAAttaaaaaagtacaaataaaaaaagaatcGTAACAAATCAAAAGATACAAAGTCTAGAAGCAATTCCTTTGCCCGTGAGAGGACACTCCTTACACACAACACAGGTTAAAGCCGTAAATGAATCCTAATAAGAGTTTGTGACTGACAACTATTCTCTAGCTTGTGTATGACTCTTCATTTTCATTGTGCTTCACACACTAATCTCTTTACTATACCACATATTTACAGTTGTCTTCTGTCTAGAATACTCCTGCTTATCTCCAAAATATTCCGCTCCTCACACTTCAACGCGCCAAGCTTCTGGTGGTGACCCCATCATTTAACACCGTCCTTTTGCCTTTTGTGAGTTGTTTCCTTACAAGATCATACTCTttatttcttcctctctctctttccctccctcctcctatcgttctgactctctctttctatcccttctGCTCTgtgacggtctctctctctctctctctctctctctctctctttcttcaaaGACACATGGGCGTGGGACATCGCTCTCTAGGACAAACTAAACTCACTGAAGAAATGTCTTGTGTTGTGCATGCAAGCATGCGTGGCCTTTttgtcttactctctctttcggctcctctccccctatcccagCACACTGCTGACGACGAGTCCTTCCTCTATAGTCCACTAGACCCAGGAGTCTGGGGAGGCCGGGTAGTGACTGGTCTCATAGTTGAGTTCACTATATGGGCGGGATGCTGAGTAGAAGTCCACGTAGTTGCCGGTGGACTTGAGGCCCAGGTGCATGTTCAAGTCTGTGGCCTGAGGAGGGCGTTGGTGCACTTGGTCCTCGTAGAATGCCTCCTCAAACTGTACTCCAGGAGGGTTCTGGAACGGAGGGTAGGGCTCCTGGCCTGGGTTGGGGCCCTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2417388 True 2903 lncRNA 0.40 2 19321641 19324735

Neighbor

gene id symbol gene type direction distance location
pkia NA coding downstream 65708 19209199 ~ 19255933 (-)
sc61g NA coding downstream 124597 19193808 ~ 19197058 (-)
LOC110508678 LOC105024244 coding downstream 136315 19116082 ~ 19185326 (-)
LOC110508677 LOC106599302 coding downstream 226576 19081538 ~ 19095065 (-)
LOC110508178 LOC106569286 coding downstream 250763 19069035 ~ 19070878 (-)
LOC110508682 LOC106599592 coding upstream 8332 19333067 ~ 19341851 (-)
LOC110508683 LOC106599309 coding upstream 22571 19347306 ~ 19359854 (-)
atpsckmt LOC106599314 coding upstream 34782 19359517 ~ 19361133 (-)
LOC110508684 LOC106599312 coding upstream 36325 19361060 ~ 19367850 (-)
socs6 socs6 coding upstream 66629 19391364 ~ 19394722 (-)
G2113873 NA non-coding downstream 116241 19205189 ~ 19205400 (-)
G2113872 NA non-coding downstream 116533 19204844 ~ 19205108 (-)
G2113871 NA non-coding downstream 117385 19204057 ~ 19204256 (-)
G2113823 NA non-coding downstream 216031 19105287 ~ 19105610 (-)
G2113954 NA non-coding upstream 1337 19326072 ~ 19326720 (-)
G2113978 NA non-coding upstream 71978 19396713 ~ 19397180 (-)
G2113982 NA non-coding upstream 78713 19403448 ~ 19403721 (-)
G2113988 NA non-coding upstream 82386 19407121 ~ 19407379 (-)
G2114754 NA non-coding upstream 149132 19473867 ~ 19474185 (-)
G2113520 LOC106599295 other downstream 311976 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 355162 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 536319 18784897 ~ 18785322 (-)
G2113287 NA other downstream 579357 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1534405 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2545950 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2548481 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2618246 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3269798 22594533 ~ 22607806 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110522154 LOC105022174 misc NC_048565.1 CM023219.2 35892507 ~ 35914512 (-)
bowfin (Amia calva) G34432 LOC107584984,LOC108256437,LOC107701635 non-coding CM030124.1 CM030124.1 22780231 ~ 22783116 (+)
mexican tetra (Astyanax mexicanus) G141449 ctnnd2,ctnnd2b non-coding NC_035912.1 CM008315.1 14139873 ~ 14159883 (-)