G2114788


Basic Information

Item Value
gene id G2114788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19539751 ~ 19540581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2418288
TCAAATATGGGAACGGCAGAATCCCTCCCAGAAATGGCTTCAGGACATTTTCTTGGTAGTTGAGTTCTCCAGCCATCATGACAAATGTTTGCATGATTACTAGCGGTATGCTAGCTCTATTTTCAAAAAGTTTCTGGGAACAACAATGTAGGAACAAGTAATTGTAGGAATGCATTATACAAATACAGGTACAAGTTATCTGCCATTTTAAACAGATTTTCACAGACATTGTTTTTCACAGACACAATACAATGTTCAATCATCACATTTGTATATCTGTATGGTCCTGTAAACATACATGATCTAGCATCAGGGCATAGAACGCCAAGGCAAATGCCAGCAGCAGGAAGAAGAAGAGTACAATGATGCTTATAAGAGTTTTTGCAATCTCTAAAAACATCACCACGTAGATCCCAACACGTTCAAACCTGTGGACCAAGAGTAAATGTATTTGTTAAAATTGCTTTTGTTGATCAATACATTTATTTCATCaatttatataaatgttacttcaAAGATGGGTCTCAGTAAACCTACACTATTTTATGGCAAAAATAACTTTCTGTGTCCATACCGTTGGAAATAGAGCAGAAAGTTTATCCAGGATAGAAGAACTGCCACTACCCCAGCCTCCCAATGCCATGTGTCCTTCAGGTCCATCAGTAAAGGGATCACAAACAACAGAGAACTGATGGCAGCACCCCAGTCCAATGCATTGGTCACATCATAGAAGTACTTTGAACCCTTGAATAGAAACAAATTGCATCAACTTATTTTTCAATATTGTAGCAAATTCCAGGGGGTAGCACTGACTGGGACTCGAACCCCGCT

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily A member 1-like isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2418288 True 831 lncRNA 0.39 1 19539751 19540581

Neighbor

gene id symbol gene type direction distance location
LOC110508692 LOC106599326 coding downstream 22461 19490721 ~ 19517290 (-)
LOC110508691 LOC106599325 coding downstream 51203 19484950 ~ 19488548 (-)
tmem70 LOC106599322 coding downstream 67334 19469835 ~ 19472417 (-)
crispld1b LOC106599318 coding downstream 113408 19415704 ~ 19426343 (-)
socs6 socs6 coding downstream 145029 19391364 ~ 19394722 (-)
LOC110508693 dnjb6 coding upstream 1331 19541912 ~ 19558555 (-)
LOC110508694 LOC106599332 coding upstream 102392 19642973 ~ 19648077 (-)
LOC110508698 LOC106599334 coding upstream 131750 19672331 ~ 19724429 (-)
LOC118944854 NA coding upstream 215584 19756165 ~ 19787841 (-)
LOC110508281 LOC106599594 coding upstream 247865 19788446 ~ 19789753 (-)
G2114796 NA non-coding downstream 2115 19536964 ~ 19537636 (-)
G2114795 NA non-coding downstream 2830 19536460 ~ 19536921 (-)
G2114741 NA non-coding downstream 49309 19489813 ~ 19490442 (-)
G2114757 NA non-coding downstream 63720 19475831 ~ 19476031 (-)
G2114754 NA non-coding downstream 65566 19473867 ~ 19474185 (-)
G2114785 LOC106599333 non-coding upstream 89524 19630105 ~ 19637488 (-)
G2114789 NA non-coding upstream 100910 19641491 ~ 19641944 (-)
G2114851 LOC106569237 non-coding upstream 116520 19657101 ~ 19658710 (-)
G2114910 NA non-coding upstream 204850 19745431 ~ 19745687 (-)
G2114918 NA non-coding upstream 217210 19757791 ~ 19758133 (-)
LOC110508678 LOC105024244 other downstream 417695 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 530086 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 573272 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 754429 18784897 ~ 18785322 (-)
G2113287 NA other downstream 797467 18741918 ~ 18742284 (-)
G2115838 NA other upstream 1318559 20859140 ~ 20859530 (-)
G2117313 NA other upstream 2330104 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 2332635 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 2402400 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 3053952 22594533 ~ 22607806 (-)

Expression


Co-expression Network