Gene
RNA
| Item | Value |
|---|---|
| gene id | G2114427 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 20054350 ~ 20141076 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: retrotransposon-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2417898 | True | 407 | lncRNA | 0.55 | 2 | 20054350 | 20141076 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110508700 | LOC106599341 | coding | upstream | 121256 | 19924881 ~ 19933094 (+) |
| LOC110508697 | LOC106599330 | coding | upstream | 387154 | 19657025 ~ 19667196 (+) |
| LOC110508695 | LOC106599333 | coding | upstream | 417525 | 19623468 ~ 19636825 (+) |
| LOC110508279 | LOC106599328 | coding | upstream | 464836 | 19586093 ~ 19589514 (+) |
| LOC110508179 | LOC106599327 | coding | upstream | 512003 | 19531043 ~ 19542347 (+) |
| LOC110508704 | LOC106599349 | coding | downstream | 197147 | 20338223 ~ 20364502 (+) |
| LOC110508181 | NA | coding | downstream | 259437 | 20400513 ~ 20413035 (+) |
| LOC110508707 | NA | coding | downstream | 331957 | 20473033 ~ 20475279 (+) |
| LOC110508709 | LOC106599357 | coding | downstream | 367188 | 20508264 ~ 20518432 (+) |
| LOC110508710 | xkr4 | coding | downstream | 392709 | 20533785 ~ 20621097 (+) |
| G2114415 | LOC106599343 | non-coding | upstream | 12806 | 20041018 ~ 20041544 (+) |
| G2114411 | NA | non-coding | upstream | 17048 | 20037014 ~ 20037302 (+) |
| G2114407 | NA | non-coding | upstream | 20958 | 20033123 ~ 20033392 (+) |
| G2114401 | NA | non-coding | upstream | 25423 | 20028728 ~ 20028927 (+) |
| G2114241 | LOC106599337 | non-coding | upstream | 248171 | 19805839 ~ 19806179 (+) |
| G2114686 | NA | non-coding | downstream | 276307 | 20417383 ~ 20417583 (+) |
| G2114689 | NA | non-coding | downstream | 280316 | 20421392 ~ 20421640 (+) |
| G2114690 | NA | non-coding | downstream | 280951 | 20422027 ~ 20422228 (+) |
| G2114693 | NA | non-coding | downstream | 285310 | 20426386 ~ 20426648 (+) |
| G2114698 | NA | non-coding | downstream | 290272 | 20431348 ~ 20431581 (+) |
| G2113578 | NA | other | upstream | 977932 | 19076077 ~ 19076418 (+) |
| G2113059 | NA | other | upstream | 1385854 | 18667115 ~ 18668496 (+) |
| G2112127 | NA | other | upstream | 2150426 | 17903198 ~ 17903924 (+) |
| G2111491 | NA | other | upstream | 2298769 | 17754937 ~ 17755581 (+) |
| G2115369 | NA | other | downstream | 300657 | 20441733 ~ 20442169 (+) |
| LOC110508722 | LOC106569260 | other | downstream | 699494 | 20840508 ~ 20842019 (+) |
| G2116347 | NA | other | downstream | 1233419 | 21374495 ~ 21375078 (+) |
| smg7 | smg7 | other | downstream | 2939340 | 23056778 ~ 23087821 (+) |
| LOC110508761 | LOC106599440 | other | downstream | 2961333 | 23102409 ~ 23103987 (+) |
