G2115513


Basic Information

Item Value
gene id G2115513
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20664232 ~ 20665014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2419112
tccctacacagtgcactacttttgaccagagctctatggtcactggtcagcagtagtacactatatagggaatatggtgccatttgggatgtaaactTAAACAACTCTTCAGTAGAATCAGCAAAAttgaataaaaatgtattggtcatgtgccgaatacaacaggtgtagactttacagtgaaatgctgactacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgctgaatacaacaggtgtagactttacagtgaaatgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2419112 True 608 lncRNA 0.38 2 20664232 20665014

Neighbor

gene id symbol gene type direction distance location
tgs1 tgs1 coding upstream 12498 20637091 ~ 20651734 (+)
LOC110508711 NA coding upstream 38356 20621175 ~ 20625876 (+)
LOC110508710 xkr4 coding upstream 43135 20533785 ~ 20621097 (+)
LOC110508709 LOC106599357 coding upstream 145800 20508264 ~ 20518432 (+)
LOC110508707 NA coding upstream 188953 20473033 ~ 20475279 (+)
LOC110508716 dcup coding downstream 9585 20674599 ~ 20681885 (+)
LOC110508718 LOC106599369 coding downstream 143636 20808650 ~ 20813055 (+)
LOC110508722 LOC106569260 coding downstream 175494 20840508 ~ 20842019 (+)
LOC110508723 LOC106599374 coding downstream 296150 20961164 ~ 21152939 (+)
LOC110508725 klf4 coding downstream 572150 21204573 ~ 21239672 (+)
G2115408 NA non-coding upstream 185425 20478561 ~ 20478807 (+)
G2114702 NA non-coding upstream 229310 20434594 ~ 20434922 (+)
G2114701 NA non-coding upstream 229965 20434064 ~ 20434267 (+)
G2114700 NA non-coding upstream 230425 20433405 ~ 20433807 (+)
G2115529 NA non-coding downstream 32169 20697183 ~ 20699375 (+)
G2115703 NA non-coding downstream 84099 20749113 ~ 20795656 (+)
G2115730 NA non-coding downstream 121624 20786638 ~ 20793347 (+)
G2115748 NA non-coding downstream 156563 20821577 ~ 20822238 (+)
G2115369 NA other upstream 222063 20441733 ~ 20442169 (+)
LOC110508695 LOC106599333 other upstream 1027479 19623468 ~ 19636825 (+)
G2113578 NA other upstream 1587814 19076077 ~ 19076418 (+)
G2113059 NA other upstream 1995736 18667115 ~ 18668496 (+)
G2112127 NA other upstream 2760308 17903198 ~ 17903924 (+)
G2116347 NA other downstream 709481 21374495 ~ 21375078 (+)
smg7 smg7 other downstream 2415402 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 2437395 23102409 ~ 23103987 (+)
G2118574 NA other downstream 2498852 23163866 ~ 23164323 (+)

Expression

G2115513 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

G2115513 Expression in each Bioproject

Bar chart with 18 bars.
G2115513 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network