G2115671 (dcup)


Basic Information

Item Value
gene id G2115671
gene name dcup
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20677514 ~ 20737477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2419316
aagagacagacagTATTCTCTTCAGAAAGAGAAAAACATCCAGAATTGGACCAGATCTGTCTTGATCTGTCCTGGGATTCCATACTTGATAAGACCTGGTGGTTTATCGGATTACTGTGAATACATGATATAGTCTCTACAATCCAAGCCAATGTTGCTTTGGTTTTTGGGTGCTGCTTCGCTGCTAGTTTGATGATTGCGGTCAATGTTGCCAGGTGACGGGGGTGTTACTTGAGGTTGAGGAGGTGGCGAGAGTGAGCGTGGACAGCTTCTACGAAGGCACCCACGTTCTCCGGGTCCATGTCAGGGTACAGCCCGTGGCCCAGGTTGGCAATGTACCCTCTGGTGCCAAAGCCTTCCAGCATCTTTTTCACTATCTCATATATACGCTCTTTGGGGGCATATAGCGCACAGGGGTCCATGTTCCCCTGGAGGCTAACCTTTCCTCCAGTTCGCTCCCGCGCTGAGCGAGGGTCGATGGTCCAATCCAAACCAACAACCTCATAGTGGGACTGAGAGAGGTCCTCCAGACCATAGTGGCCGTCCTTGGCAAACACAATCATGGGGACATCCTGGCCTGACTCCTTCAGTTGGTCCTTGACCTTACGGGCGATGTCTCGGAGGTAGGGCAGGGAGAACTCCTGGAACTCCGCTGGGCCCAGACAGCCAGCATGGGACTCAAACACCTGCAAGGCCTGTGCTCCAGCAGCCACCTGTCCCAGCAGGTACTCCACTATGATGTCAGTCAGCATCTTTAACAGCTGGTGGCTGGCTTCAGGGTGACGGTACAGCCAGCGCTTAGCCTTAGATTGGGTTGTTGAGCCTCCCCCCTCAATCATATAGGCCATCAGGGTCCACGGGCACCAGTGAAGCCGATGAGAGGGACCTTGCCTTCCAGTTTGTGGCGCGTCAGTGTAATGGCCTTGAAGACGTAATCCAGCTCCTTGTTGACATCCACCTTGGACTGCAGGAGCAGCAGGTCCTCTGGCTCCTTTAAGGGCTCTGGGAAAGTAGGGCCCTTTCCTGCCACCATCTGGACATCCATACCCATGGCCTGGgagcaggtaaac
>TU2419315
tttatttgactgaATAAAAAACCAAGAGCAAAATATACACACACTAATGCTTAGGCTTTAGTACATCAGTCACAGTCATAATTGCAGTACAACAGTCTAAACAACAACAATTGGACTGAGGCTATCACATTGAATCTCCTTCACTACTGTTGTTTTGATAAGGTACACTTGTTTCTTCAATTTTAGGTGCACTACATCTGAATAAAACAGATCAGTGGTACACATGAATAATATGAAATATTACAAGGTATTGCGCTGTGGCAATGTGTTTAGTTTGTTTTAGGATTATCTATAGAACATCATGTAGTATTCTCTTCAGAAAGAGAAAAACATCCAGAATTGGACCAGATCTGTCTTGATCTGTCCTGGGATTCCATACTTGATAAGACCTGGTGGTTTATCGGATTACTGTGAATACATGATATAGTCTCTACAATCCAAGCCAATGTTGCTTTGGTTTTTGGGTGCTGCTTCGCTGCTAGTTTGATGATTGCGGTCAATGTTGCCAGGTGACGGGGGTGTTACTTGAGGTTGAGGAGGTGGCGAGAGTGAGCGTGGACAGCTTCTACGAAGGCACCCACGTTCTCCGGGTCCATGTCAGGGTACAGCCCGTGGCCCAGGTTGGCAATGTACCCTCTGGTGCCAAAGCCTTCCAGCATCTTTTTCACTATCTCATATATACGCTCTTTGGGGGCATATAGCGCACAGGGGTCCATGTTCCCCTGGAGGCTAACCTTTCCTCCAGTTCGCTCCCGCGCTGAGCGAGGGTCGATGGTCCAATCCAAACCAACAACCTCATAGTGGGACTGAGAGAGGTCCTCCAGACCATAGTGGCCGTCCTTGGCAAACACAATCTGTGACAGAACATAAAGGACATGAGGGAGATACAGTCCAGGGAACTTTAAAGACACACTGCAGTGAAAAACTAATTACAAAACAATTGTTAAATATTGACCGATGTCAACATTGGAGACCGATGACACGCCATACAATGATTCAAGGCATAAAAAAAAACTCAAATGTATTTCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2419316 False 1070 lncRNA 0.54 7 20677514 20737477
TU2419315 True 1030 lncRNA 0.43 3 20678764 20681820

Neighbor

gene id symbol gene type direction distance location
LOC110508714 tmem68 coding downstream 40423 20629353 ~ 20637091 (-)
LOC110508708 LOC106599597 coding downstream 173824 20498485 ~ 20503690 (-)
LOC110508706 LOC106599351 coding downstream 202469 20461499 ~ 20475045 (-)
LOC110508705 LOC106599238 coding downstream 253673 20422383 ~ 20423841 (-)
LOC118944858 NA coding downstream 392382 20283051 ~ 20285132 (-)
LOC118936610 NA coding upstream 54663 20792140 ~ 20799687 (-)
LOC110508719 LOC106599371 coding upstream 65734 20803211 ~ 20809150 (-)
LOC110508720 LOC106599373 coding upstream 78216 20815693 ~ 20840194 (-)
LOC110508727 LOC106599380 coding upstream 614189 21351652 ~ 21368101 (-)
LOC110508729 LOC106599387 coding upstream 639221 21376698 ~ 21521909 (-)
G2115635 lyn non-coding downstream 8552 20654687 ~ 20668962 (-)
G2115558 NA non-coding downstream 130828 20488981 ~ 20546686 (-)
G2115581 LOC106599357 non-coding downstream 159087 20517392 ~ 20518427 (-)
G2115392 NA non-coding downstream 221843 20455362 ~ 20455671 (-)
G2115370 NA non-coding downstream 233819 20443334 ~ 20443695 (-)
G2115812 NA non-coding upstream 58852 20796329 ~ 20845750 (-)
G2115806 LOC106599369 non-coding upstream 72475 20809952 ~ 20813045 (-)
G2115807 NA non-coding upstream 75672 20813149 ~ 20823179 (-)
G2115833 NA non-coding upstream 110891 20848368 ~ 20848656 (-)
LOC110508678 LOC105024244 other downstream 1555458 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 1667849 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 1711035 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 1892192 18784897 ~ 18785322 (-)
G2113287 NA other downstream 1935230 18741918 ~ 18742284 (-)
G2115838 NA other upstream 121663 20859140 ~ 20859530 (-)
G2117313 NA other upstream 1133208 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 1135739 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 1205504 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 1857056 22594533 ~ 22607806 (-)

Expression


Co-expression Network