G2115806 (LOC106599369)


Basic Information

Item Value
gene id G2115806
gene name LOC106599369
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20809952 ~ 20813045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2419470
CCAAGGAAAAGCCTTTATTGAAACAATACTGCATGAAATTAAACTAAAATGTACAGCGAAGTACTTTAACTAAAAAGGCTTTATTATAAACCAGGAATAGGTTTGGTTCCATTTAATCTTTATACCGTTCCCTCTACTTTGCTAACCACACCCTTCCCCCACACGACATCCATCTTGTGCAAGTGAGCCTTGAAGGACTTGGAGAATGTGCTCTTGACGATCTGCATCGGGACAGACTTGCCACTGAGGTAAACCTTGTTCAGACACTCTGGGAGCCAGGACTCGGCGCTCGGTGGCTTACCTACTCTCTCTGTCAAAGTGGCAGCATAGGAGAAAATGTAGCCCGTCATGAATGCGTCAAACCCTGCCCGGTGGGTACCTCCCTCCAGCTTCTTCCTCTTGGACTCTTCTTTCTTCTCTGCATCCGGTGTGGCCAGAGGCTGTGGCTCTGACACTCCATTTCTTTCCACCTCTTTGTCTGTCTTCATTTCCTCATCTGCAGACACAGCCTGTGGCTCTCTGACTCCGTTGCCTTCCTCCACCTTAGTCTCCACCTTAGTCTCCATCTTCTCATCGCTCTCTGGTATCTGTGCCTGAGCCCCATCTACCAGCTCTGTGAGAGGGGGAGGTTTGGTGTCTTTGTCAGGGATCACCTGGTCCTGCTTTAGCTCCATATGGGGCTGCTTGCTCTTGGGGGCACCTTCAACTTTCCCCTGAGAAGAGTTCTTTCTTTTCCTCTTCCGTttctttttcttttccttttcatCGTGCTGGATGATGAGGTCAGTGTCGTGTGACAAGGGACACTGTGACCCATTGGGGCACCAACCATAAGCAGAGAAGCGCTGGCAGACATTGAGAAGTCCATCCGGGCTAAACCCAGCTAGACAGGGCCTATAGTCCACATAGTTGCTCAGGGGCGCTGAGTATTTGCAGAACTCCAGGAACAGATGGCGTCCCCCACCACCAGCCTCAATCGACTTGCTGTTGTCCAGTTTGCACTTCTTGTAGGCATACTCCAGGTAAGAGGCAGCAAAGCGCAGCTCATACTCTGTAGCGTACTTGGTGTCATAGATCCCAGCAGGGAACATCTGGGACAAGTCAGCAGTGAACGTGCCTAGTTTATCTGGCAGTTGGGCATAGAAGCACTGATAAAGGAACACCATGTCAATCAAGCCATTGTGCAGCACCAAAGGCTTGCGAGCCCGTAGGAGTTCCACAAACAGCATCCTCATGTTCATTCCATGGGCATCCAC

Function

NR:

description
target of EGR1 protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2419470 True 1256 lncRNA 0.50 3 20809952 20813045

Neighbor

gene id symbol gene type direction distance location
LOC110508719 LOC106599371 coding downstream 1379 20803211 ~ 20809150 (-)
LOC118936610 NA coding downstream 10265 20792140 ~ 20799687 (-)
LOC110508717 LOC106569256 coding downstream 79296 20685926 ~ 20730656 (-)
LOC110508714 tmem68 coding downstream 172861 20629353 ~ 20637091 (-)
LOC110508708 LOC106599597 coding downstream 306262 20498485 ~ 20503690 (-)
LOC110508720 LOC106599373 coding upstream 2648 20815693 ~ 20840194 (-)
LOC110508727 LOC106599380 coding upstream 538621 21351652 ~ 21368101 (-)
LOC110508729 LOC106599387 coding upstream 563653 21376698 ~ 21521909 (-)
LOC110508730 vato coding upstream 709814 21522859 ~ 21531316 (-)
LOC110508732 NA coding upstream 732195 21545240 ~ 21547961 (-)
G2115671 dcup non-coding downstream 72475 20677514 ~ 20737477 (-)
G2115635 lyn non-coding downstream 140990 20654687 ~ 20668962 (-)
G2115558 NA non-coding downstream 263266 20488981 ~ 20546686 (-)
G2115807 NA non-coding upstream 104 20813149 ~ 20823179 (-)
G2115833 NA non-coding upstream 35323 20848368 ~ 20848656 (-)
G2115847 NA non-coding upstream 58642 20871687 ~ 20871897 (-)
G2115864 NA non-coding upstream 74383 20887428 ~ 20887676 (-)
G2116108 NA non-coding upstream 198293 21011338 ~ 21011963 (-)
LOC110508678 LOC105024244 other downstream 1687896 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 1800287 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 1843473 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 2024630 18784897 ~ 18785322 (-)
G2113287 NA other downstream 2067668 18741918 ~ 18742284 (-)
G2115838 NA other upstream 46095 20859140 ~ 20859530 (-)
G2117313 NA other upstream 1057640 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 1060171 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 1129936 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 1781488 22594533 ~ 22607806 (-)

Expression


Co-expression Network