G2115807


Basic Information

Item Value
gene id G2115807
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20813149 ~ 20823179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2419472
atggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaccttcaggggtttggaaattgctccaaggatgaacaagacttgtggaggtctacaatttattttctgaggtcttggctgttttcttttgattttccaatgatgtcaagcaaagaggcactgagtttgaaggtagtccttgaaatgcatccacagatacacctccaattaactcaaatgttgtcaattagcctatcagaagcttctaaagccatgaccatTTTCatgatcattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaatattacttgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttgacaagaaatttgtggagtggttgaaaaacaagttttaatgactccaactaaagtgtatgtaaacttctgacttcaactatacatATGAAAGTAACAAATCTAACACTCTTAACATGGAGAAAGGGTTGTGGTCTGAATGAAAAACGGCATACTCACTGCCTTCCCAACATTGAGATCCCTGCCTTAAGATTCATAGTGACTGGTAGTATTTTTGTTCTGGACGATTGTGCGTTTCAGATGAACGAGTCCAAGCTAAGGTGTAGGGAATAGATCCTTACCATTTTTATTAAAGGGCTAGTTAATGAGTGGTTTACCAGACTACTGAGGTCTCTTGTGGAGACTAATAAAAATGTACATTACAGAGCATTTAAACAGTAAACTTACCAGTAAAACAAGTTTGTTTAAATGTACACCCCCACGAGCACTGGAAATGTGATCGTTTGTACATACCTTTAACATTTTGAAATGTTTGGCAGGCCTATATGTTGGTGTGCACATTTTTAAGGATTGTTTTTCAGATGACTGCTTAGAGAGAAACTGGTTCAGAATCTACCAAAGGATCACTTTATAGCTCTATGTATAGAGGAATGTGTCGAGTGTGGCTTGAATGTGTGATCCACCACACTTTTGTCAGTGGGTCCTATTTTTGGTCAGCGGCTCCGTTGGGTATAAGCTGTGCAAACAGCACTAGTTGGTGTGGATGGCTCACTCACTTGTGCTTTGGTTCATGACTCCCTTGGCACCTGTTTTGATATACTGAAATACTCCAGTCAGTAACTACTTTAATAGGAAATTGCACTTGAAAAGAACAATGTTAATCTCGTTTATCACTACATTTCTATGCAATAAATGTAAACTGTGTCAGGATTGTTTTGCATAGAGGATCTATTTTGATATTTATAAAAAGATCAATTTCACATCTTACTACTTTGTATGCAGTTTGTCTGGATGCAATGTTGTGATATTGATTGTTCAAATTCTTTATTTTGTTGTTATTCCCCTccagtcttggctgatttatgaACATGTATTAGCAGAACACTTGTTTTAATCCAAATCTGGTTTGAGTTGTACTTTGTTTAAGGAACATGTTCCCAATCgcttaaataaatgtttattttgctTCTTTTGGTG
>TU2419474
caaactaatagtagagagaatgaataatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgatttttggcccattcctcctgacagagctggtgcaactgagtcaggtttgtaggcctccttgctcacaaattttgcccacaaattttctataggattgaagtcagggctttgatggccacgtcaataccttgactttgttgtccttaagctattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacataattttctgtcctcatgatgccatctattttgtgagtgcaccaggccctcctgtagcaaagcccccccacaacatgatgctgctaccccgtgctctacggttgggatggtgttcttcggcttgcaagcatccccctttttcctccaaacattacaatggtcattatggcccaacagttctatttttgtttcatcagaccagaggacatttctccaaatagtatgatctttgtccccatgtgcagttgcaaaccatagtctggcttttttatggcggtttggtagcagtggcttcttccttgctgagcggcctttcaggacttgttttactgtggatatatatatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggatggatttgcacttttcgcattaatctctaggagacagaacgcgtctccttcctgaacggtatgacagctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaccttcaggggtttggaaattgctccaaggatgaacaagacttgtggaggtctacaatttattttctgaggtcttggctgttttcttttgattttccaatgatgtcaagcaaagaggcactgagtttgaaggtagtccttgaaatgcatccacagatacacctccaattaactcaaatgttgtcaattagcctatcagaagcttctaaagccatgaccatTTTCatgatcattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaatattacttgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttgacaagaaatttgtggagtggttgaaaaacaagttttaatgactccaactaaagtgtatgtaaacttctgacttcaactatacatATGAAAGTAACAAATCTAACACTCTTAACATGGAGAAAGGGTTGTGGTCTGAATGAAAAACGGCATACTCACTGCCTTCCCAACATTGAGATCCCTGCCTTAAGATTCATAGTGACTGGTAGTATTTTTGTTCTGGACGATTGTGCGTTTCAGATGAACGAGTCCAAGCTAAGGTGTAGGGAATAGATCCTTACCATTTTTATTAAAGGGCTAGTTAATGAGTGGTTTACCAGACTACTGAGGTCTCTTGTGGAGACTAATAAAAATGTACATTACAGAGCATTTAAACAGTAAACTTACCAGTAAAACAAGTTTGTTTAAATGTACACCCCCACGAGCACTGGAAATGTGATCGTTTGTACATACCTTTAACATTTTGAAATGTTTGGCAGGCCTATATGTTGGTGTGCACATTTTTAAGGATTGTTTTTCAGATGACTGCTTAGAGAGAAACTGGTTCAGAATCTACCAAAGGATCACTTTATAGCTCTATGTATAGAGGAATGTGTCGAGTGTGGCTTGAATGTGTGATCCACCACACTTTTGTCAGTGGGTCCTATTTTTGGTCAGCGGCTCCGTTGGGTATAAGCTGTGCAAACAGCACTAGTTGGTGTGGATGGCTCACTCACTTGTGCTTTGGTTCATGACTCCCTTGGCACCTGTTTTGATATACTGAAATACTCCAGTCAGTAACTACTTTAATAGGAAATTGCACTTGAAAAGAACAATGTTAATCTCGTTTATCACTACATTTCTATGCAATAAATGTAAACTGTGTCAGGATTGTTTTGCATAGAGGATCTATTTTGATATTTATAAAAAGATCAATTTCACATCTTACTACTTTGTATGCAGTTTGTCTGGATGCAATGTTGTGATATTGATTGTTCAAATTCTTTATTTTGTTGTTATTCCCCTccagtcttggctgatttatgaACATGTATTAGCAGAACACTTGTTTTAATCCAAATCTGGTTTGAGTTGTACTTTGTTTAAGGAACATGTTCCCAATCgcttaaataaatgtttattttgctTCTTTTGGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2419472 False 1586 lncRNA 0.37 2 20813149 20822230
TU2419474 True 2514 lncRNA 0.39 2 20813149 20823179

Neighbor

gene id symbol gene type direction distance location
LOC110508719 LOC106599371 coding downstream 4576 20803211 ~ 20809150 (-)
LOC118936610 NA coding downstream 13462 20792140 ~ 20799687 (-)
LOC110508717 LOC106569256 coding downstream 82493 20685926 ~ 20730656 (-)
LOC110508714 tmem68 coding downstream 176058 20629353 ~ 20637091 (-)
LOC110508708 LOC106599597 coding downstream 309459 20498485 ~ 20503690 (-)
LOC110508727 LOC106599380 coding upstream 528487 21351652 ~ 21368101 (-)
LOC110508729 LOC106599387 coding upstream 553519 21376698 ~ 21521909 (-)
LOC110508730 vato coding upstream 699680 21522859 ~ 21531316 (-)
LOC110508732 NA coding upstream 722061 21545240 ~ 21547961 (-)
LOC110508734 LOC106599390 coding upstream 842229 21665408 ~ 21700959 (-)
G2115806 LOC106599369 non-coding downstream 104 20809952 ~ 20813045 (-)
G2115671 dcup non-coding downstream 75672 20677514 ~ 20737477 (-)
G2115635 lyn non-coding downstream 144187 20654687 ~ 20668962 (-)
G2115833 NA non-coding upstream 25189 20848368 ~ 20848656 (-)
G2115847 NA non-coding upstream 48508 20871687 ~ 20871897 (-)
G2115864 NA non-coding upstream 64249 20887428 ~ 20887676 (-)
G2116108 NA non-coding upstream 188159 21011338 ~ 21011963 (-)
G2116194 NA non-coding upstream 337393 21160572 ~ 21160771 (-)
LOC110508678 LOC105024244 other downstream 1691093 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 1803484 19007232 ~ 19011635 (-)
LOC118944847 NA other downstream 1846670 18958044 ~ 18966479 (-)
G2113320 LOC100194703 other downstream 2027827 18784897 ~ 18785322 (-)
G2113287 NA other downstream 2070865 18741918 ~ 18742284 (-)
G2115838 NA other upstream 35961 20859140 ~ 20859530 (-)
G2117313 NA other upstream 1047506 21870685 ~ 21871053 (-)
mrps14 mrps14 other upstream 1050037 21873216 ~ 21876709 (-)
LOC110508740 kiaa0040 other upstream 1119802 21942981 ~ 21948557 (-)
G2118200 brinp2 other upstream 1771354 22594533 ~ 22607806 (-)

Expression


Co-expression Network