Fish Transcriptome and Expression Database

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model fish

XLOC_000401 (CT573012.1)

Basic Information

Item	Value
gene id	XLOC_000401
gene name	CT573012.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007112.7
NCBI id	CM002885.2
chromosome length	59578282
location	33967157 ~ 33967273 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000685
agccacagccatgtcaccttGCAGACCAAGACtggttacttactgaagctaatcagggctgagtctggtcagtacctTGATGTGataccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000115905

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00000685	True	117	rRNA	0.48	1	33967157	33967273

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_000400	CU915566.1	coding	upstream	232023	33735018 ~ 33735134 (+)
XLOC_000399	nsun3	coding	upstream	244377	33697170 ~ 33722780 (+)
XLOC_000398	arl13b	coding	upstream	272362	33668236 ~ 33694795 (+)
XLOC_000397	znf654	coding	upstream	303452	33647682 ~ 33663705 (+)
XLOC_000396	htr1fb	coding	upstream	331853	33634186 ~ 33635304 (+)
XLOC_000402	epha6	coding	downstream	1742	33969015 ~ 34201195 (+)
XLOC_000403	dre-mir-734	coding	downstream	155607	34122880 ~ 34122972 (+)
XLOC_000404	arl6	coding	downstream	236544	34203817 ~ 34234056 (+)
XLOC_000405	slc5a7a	coding	downstream	276377	34243650 ~ 34261993 (+)
XLOC_000406	kctd12.2	coding	downstream	328652	34295925 ~ 34297403 (+)
XLOC_000394	NA	non-coding	upstream	448334	33517802 ~ 33518823 (+)
XLOC_000390	BX322647.1	non-coding	upstream	750439	33215241 ~ 33216718 (+)
XLOC_000388	CU915272.1	non-coding	upstream	1260930	32706109 ~ 32706227 (+)
XLOC_000386	CU462859.1	non-coding	upstream	1453053	32513989 ~ 32514104 (+)
XLOC_000407	CR848003.1	non-coding	downstream	432967	34400240 ~ 34400354 (+)
XLOC_000408	NA	non-coding	downstream	483386	34450659 ~ 34454447 (+)
XLOC_000414	NA	non-coding	downstream	890095	34857368 ~ 34861057 (+)
XLOC_000415	NA	non-coding	downstream	1067021	35034294 ~ 35093512 (+)

Expression

Co-expression Network