G2117349


Basic Information

Item Value
gene id G2117349
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21918133 ~ 21922635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2421131
CAGCTACAGTGGAGCTCTTCCTGCTGACCCTGGAGCCCTTGACAGCCCAAATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCCCCCACAGGGATCTCCCCACTGGAGCCCTCAGCAGAGCTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAGACATTAGTAAATGGGTTAATATCATATTAGTGTTCCATGCTGTTATTTTTTTTCCCTCTAGGAGAAATAATGTTATGTTGCACATTTTCACAAGTGCAAAAAAAAAGGACTTTTGTGACAGGCAAAATATTTCTCTAGTAAAGATTTGTTTAGAAGTATCACAAGTATTTTGCATACAATTTACAGTCTTATATTTGAGGAATTATTCTCCAAAATCAGATTTTGTCTTGTGTTTttagacctcaaaagtggtcttcTGTTGAGATAGGTTCCCATCCCAGGCCATCAGTTTTGTAGTTCTAGCTATATGACAAACCTCTAAATGACTAGGAAAGATAAGCACCATGTAATTTCCAGCTTTGCAGTGCTTATCTTTTCTTTTAATTTGGGGTTCAGGAATGTAACTTGCTGGATCTACGCAACCAATGGCGTGGGATGTGGACT
>TU2421137
TGGTGTGGAGCTCTTCCTGCTGACCCGGGAGCCCTTGACAGCCCAGATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCTCCCACAGTGATCTCCCCACTGGAGCCCTCAGCAGAGGTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAGACATTAGTAAATGGGTTAATATCATATTAGTGTTCCATGCTGTTATTTTTTTTCCCTCTAGGAGAAATAATGTTATGTTGCACATTTTCACAAGTGCAAAAAAAAAGGACTTTTGTGACAGGCAAAATATTTCTCTAGTAAAGATTTGTTTAGAAGTATCACAAGTATTTTGCATACAATTTACAGTCTTATATTTGAGGAATTATTCTCCAAAATCAGATTTTGTCTTGTGTTTttagacctcaaaagtggtcttcTGTTGAGATAGGTTCCCATCCCAGGCCATCAGTTTTGTAGTTCTAGCTATATGACAAACCTCTAAATGACTAGGAAAGATAAGCACCATGTAATTTCCAGCTTTGCAGTGCTTATCTTTTCTTTTAATTTGGGGTTCAGGAATGTAACTTGCTGGATCTACGCAACCAATGGCGTGGGATGTGGACT
>TU2421123
CAGCTACAGTGGAGCTCTTCCTGCTGACCCTGGAGCCCTTGACAGCCCAAATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCCCCCACAGGGATCTCCCCACTGGAGCCCTCAGCAGAGCTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAACCATTGATATAAGGGTTAATGCTCTTCTGTGTCATGTCATGAAGTTTGATATTTAATTGACTTACTGTTTCAAGACCTGCTATACCTGAGAGAGCTGTAAATCACTGTAATTGTATAAGAGAGACTTTAAAGGAACAGTCTACACAccaaaatcaaagtttgtcagagGTTTTCAGGCCAAATAAATGGTCTAATATTGATACATAAGTCCATGTGCCTTGCCATCTGTTGTGTAGATCTAGCCATGTGCCCTCATCCCAAATCCCAAAAGAATGCAAAATATAGTCACTATCTTAAAT
>TU2421140
TGGTGTGGAGCTCTTCCTGCTGACCCGGGAGCCCTTGACAGCCCAGATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCTCCCACAGTGATCTCCCCACTGGAGCCCTCAGCAGAGGTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAACCATTGATATAAGGGTTAATGCTCTTCTGTGTCATGTCATGAAGTTTGATATTTAATTGACTTACTGTTTCAAGACCTGCTATACCTGAGAGAGCTGTAAATCACTGTAATTGTATAAGAGAGACTTTAAAGGAACAGTCTACACAccaaaatcaaagtttgtcagagGTTTTCAGGCCAAATAAATGGTCTAATATTGATACATAAGTCCATGTGCCTTGCCATCTGTTGTGTAGATCTAGCCATGTGCCCTCATCCCAAATCCCAAAAGAATGCAAAATATAGTCACTATCTTAAAT

Function

NR:

description
tenascin-N isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2421131 False 710 lncRNA 0.43 3 21918133 21921268
TU2421137 False 706 lncRNA 0.43 2 21918133 21922635
TU2421123 False 565 lncRNA 0.46 2 21919532 21921268
TU2421140 True 561 lncRNA 0.46 2 21919532 21922635

Neighbor

gene id symbol gene type direction distance location
mrps14 mrps14 coding downstream 41424 21873216 ~ 21876709 (-)
LOC110508737 cacybp coding downstream 51098 21864614 ~ 21867035 (-)
plk3 LOC106599391 coding downstream 55702 21852912 ~ 21862431 (-)
eif2b3 ei2bg coding downstream 132230 21707382 ~ 21785903 (-)
LOC110508734 LOC106599390 coding downstream 217174 21665408 ~ 21700959 (-)
LOC110508740 kiaa0040 coding upstream 22174 21942981 ~ 21948557 (-)
tnr tnr coding upstream 43660 21966295 ~ 22125301 (-)
cop1 rfwd2 coding upstream 279813 22202448 ~ 22212426 (-)
astn1 astn1 coding upstream 364031 22286666 ~ 22527081 (-)
dars2 dars2 coding upstream 873004 22795639 ~ 22816743 (-)
G2117316 NA non-coding downstream 45151 21872618 ~ 21872982 (-)
G2117314 NA non-coding downstream 46296 21871475 ~ 21871837 (-)
G2117311 NA non-coding downstream 48798 21868804 ~ 21869335 (-)
G2117017 NA non-coding downstream 123372 21794518 ~ 21794761 (-)
G2117015 NA non-coding downstream 124903 21792970 ~ 21793230 (-)
G2117357 NA non-coding upstream 4924 21927559 ~ 21929837 (-)
G2117359 NA non-coding upstream 11097 21933732 ~ 21933943 (-)
G2117364 NA non-coding upstream 14845 21937480 ~ 21937682 (-)
G2117406 NA non-coding upstream 102440 22025075 ~ 22025416 (-)
G2117313 NA other downstream 47080 21870685 ~ 21871053 (-)
G2115838 NA other downstream 1058603 20859140 ~ 20859530 (-)
LOC110508678 LOC105024244 other downstream 2796077 19116082 ~ 19185326 (-)
G2113520 LOC106599295 other downstream 2908468 19007232 ~ 19011635 (-)
G2118200 brinp2 other upstream 671898 22594533 ~ 22607806 (-)
LOC110508185 LOC106569033 other upstream 1402366 23317575 ~ 23353162 (-)
LOC110508783 LOC106599501 other upstream 2742239 24664869 ~ 24677152 (-)
G2120836 NA other upstream 2808039 24730674 ~ 24734987 (-)

Expression


Co-expression Network