Gene
RNA
| Item | Value |
|---|---|
| gene id | G2117821 |
| gene name | pappa2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 22248348 ~ 22248618 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| pappa2 | Enables peptidase activity. Acts upstream of or within several processes, including angiogenesis; notochord development; and regulation of Notch signaling pathway. Is expressed in several structures, including axial mesoderm; bone tissue; nervous system; pleuroperitoneal region; and ventral mandibular arch. Orthologous to human PAPPA2 (pappalysin 2). |
| description |
|---|
| PREDICTED: pappalysin-2 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2421651 | True | 271 | lncRNA | 0.52 | 1 | 22248348 | 22248618 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cop1 | rfwd2 | coding | downstream | 35922 | 22202448 ~ 22212426 (-) |
| tnr | tnr | coding | downstream | 123047 | 21966295 ~ 22125301 (-) |
| LOC110508740 | kiaa0040 | coding | downstream | 299791 | 21942981 ~ 21948557 (-) |
| mrps14 | mrps14 | coding | downstream | 371639 | 21873216 ~ 21876709 (-) |
| LOC110508737 | cacybp | coding | downstream | 381313 | 21864614 ~ 21867035 (-) |
| astn1 | astn1 | coding | upstream | 38048 | 22286666 ~ 22527081 (-) |
| dars2 | dars2 | coding | upstream | 547021 | 22795639 ~ 22816743 (-) |
| LOC110508750 | LOC106569069 | coding | upstream | 573454 | 22822072 ~ 22828641 (-) |
| LOC110508754 | shcbp1l | coding | upstream | 685642 | 22934260 ~ 22939565 (-) |
| nmnat2 | nmnat2 | coding | upstream | 793920 | 23042538 ~ 23055346 (-) |
| G2117807 | NA | non-coding | downstream | 8599 | 22239532 ~ 22239749 (-) |
| G2117798 | pappa2 | non-coding | downstream | 19960 | 22228142 ~ 22228388 (-) |
| G2117797 | pappa2 | non-coding | downstream | 20330 | 22227659 ~ 22228018 (-) |
| G2117793 | pappa2 | non-coding | downstream | 24495 | 22223560 ~ 22223853 (-) |
| G2117792 | NA | non-coding | downstream | 25313 | 22222835 ~ 22223035 (-) |
| G2117823 | NA | non-coding | upstream | 1574 | 22250192 ~ 22250405 (-) |
| G2117830 | NA | non-coding | upstream | 12684 | 22261302 ~ 22261524 (-) |
| G2117840 | NA | non-coding | upstream | 29779 | 22278397 ~ 22280880 (-) |
| G2118030 | NA | non-coding | upstream | 296043 | 22544661 ~ 22544893 (-) |
| G2118194 | NA | non-coding | upstream | 337130 | 22585748 ~ 22601652 (-) |
| G2117313 | NA | other | downstream | 377295 | 21870685 ~ 21871053 (-) |
| G2115838 | NA | other | downstream | 1388818 | 20859140 ~ 20859530 (-) |
| LOC110508678 | LOC105024244 | other | downstream | 3126292 | 19116082 ~ 19185326 (-) |
| G2118200 | brinp2 | other | upstream | 345915 | 22594533 ~ 22607806 (-) |
| LOC110508185 | LOC106569033 | other | upstream | 1076383 | 23317575 ~ 23353162 (-) |
| LOC110508783 | LOC106599501 | other | upstream | 2416256 | 24664869 ~ 24677152 (-) |
| G2120836 | NA | other | upstream | 2482056 | 24730674 ~ 24734987 (-) |
| G2121444 | LOC106599515 | other | upstream | 2895444 | 25144062 ~ 25148520 (-) |
