G2118342


Basic Information

Item Value
gene id G2118342
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22791307 ~ 22791815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2422191
CATAAAGCGTTATACAAAACATCACTGATTAGAATAGATTCAATTTAATTGTCATTGAACAAGTACAAGTACAGTACAACGAAATGCAGTACCgatcttcatattttcaagaatggtggtggctgcattatgttatggtaTACTTGTAATTGGCAAGGAATTAGGGAGTTTTTTGGGATACAAATGGAATGgagataagcacaggcaaaatcctagaggaaaacctggttcagtctgcattccaatagacactgggagacaaattcacctttcagcaggaaaataacctaaaacacaaggccaaatatacacttgcttaccaagacagcattgaatgttccagactggcctagttacagttttgacttaaattggatTGAAGatctatggcaaaacttgaaaatggctatctagcaatgatcaacaaccaacttgacagagtttgaataatttaaaaaagaataatgtgcaaatgttgcacaattcaggTGAGCAaggctcttaaagac

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2422191 True 509 lncRNA 0.36 1 22791307 22791815

Neighbor

gene id symbol gene type direction distance location
LOC110508746 brinp2 coding upstream 127324 22547186 ~ 22663983 (+)
LOC118944815 NA coding upstream 401803 22385440 ~ 22389504 (+)
LOC118944814 NA coding upstream 407940 22378109 ~ 22383367 (+)
pappa2 pappa2 coding upstream 510413 22221394 ~ 22280894 (+)
tnn tnn coding upstream 861439 21891475 ~ 21930071 (+)
cenpl cenpl coding downstream 25058 22816873 ~ 22820125 (+)
ankrd45 ankrd45 coding downstream 36921 22828736 ~ 22830451 (+)
rasal2 NA coding downstream 39275 22831090 ~ 22913958 (+)
dhx9 dhx9 coding downstream 122841 22914656 ~ 22934260 (+)
lamc1 LOC106599430 coding downstream 149917 22941732 ~ 23022726 (+)
G2118333 NA non-coding upstream 7413 22783689 ~ 22783894 (+)
G2118330 NA non-coding upstream 9456 22781554 ~ 22781851 (+)
G2118128 NA non-coding upstream 121361 22669621 ~ 22669946 (+)
G2118024 NA non-coding upstream 251381 22539655 ~ 22539926 (+)
G2117660 NA non-coding upstream 434687 22356367 ~ 22356620 (+)
G2118532 NA non-coding downstream 285864 23077679 ~ 23201786 (+)
G2118550 NA non-coding downstream 322895 23114710 ~ 23117051 (+)
G2118530 NA non-coding downstream 336830 23128645 ~ 23159265 (+)
G2118573 NA non-coding downstream 368187 23160002 ~ 23162200 (+)
G2118577 NA non-coding downstream 376637 23168452 ~ 23169935 (+)
G2116347 NA other upstream 1416229 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 1949304 20840508 ~ 20842019 (+)
G2115369 NA other upstream 2349138 20441733 ~ 20442169 (+)
LOC110508695 LOC106599333 other upstream 3154554 19623468 ~ 19636825 (+)
G2113578 NA other upstream 3714889 19076077 ~ 19076418 (+)
smg7 smg7 other downstream 288601 23056778 ~ 23087821 (+)
LOC110508761 LOC106599440 other downstream 310594 23102409 ~ 23103987 (+)
G2118574 NA other downstream 372051 23163866 ~ 23164323 (+)
LOC110508774 LOC106599485 other downstream 1309342 24101070 ~ 24137027 (+)
G2121837 NA other downstream 2928625 25720440 ~ 25721674 (+)

Expression


Co-expression Network