G2118550


Basic Information

Item Value
gene id G2118550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23114710 ~ 23117051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2422413
gtcatacccaaatctaactgcctgtagctcaagtcctatgtggacaactacaaataccgaggtgtctggttagactgaactctccttccaggctcacgttaagcatctccaatccaaaatctagaatcggcttcctatttcgcaacaaagcatccttcactaatgctgccaaacataccctagtaaaactgaccatcctaccgatcctggacttcagcgatgtaatttacaaaatagcctccaacactactcagcaaattggatgtagtctatcacagtgccatctgttttgccaccaaagccatatatactacccaccactgtgacctgtacgctctcgttggctggccctcgcttaatattcgtctccaaacccactggctccaagtcattACTAGGTAAAGCagcgccttatctcagctcacctgtcaccatagcagcacccacccgtagcacgcgctccagcaggtatatttcactgatcaCCCCCAAAGGCAActcttactttggccgcctttccttccagtgctctgctgccaatgactggaacgaattgcaaaaatcaatgAAGCTGGAgatttatatctccctcactaactttaagcatcagctgtcagagcagcttaccgatcatggcacctgtacatagcccatctgtaaagagcccacccaactacctcatccccatattgttttttttgttgcaccccagtatctctacttgcacattcatcttctgcccaTCTATCACTcgagtgtttaattgctaaattgtaattatttcgccgctatggcctatttattgctttacctccctaatctgaCTACATTTTAGATGTCgacaattaatcggaatggcccattaattagggctgatttcaagttttcataacaataggtaatcggcatttttggacacagatcatggccgattacattgcattccacgaggagactgcgtggcaggctgactacctgttatgcgagtgcagcaaggagccaaggtaaggtgctagctagcattaaacacatgttataaaaaacaatcattctTAACATaattactagttaactacacatggttaatgttgATGATATtcctagtttatctagcttgtcctgcgttgcatataatcgatgcggtgcctgttaatttatcattgaatcacagcctactttgccaaacggtgatttaacaagcgcattcgcaattcactgttgttgcaccaatgtgtacctaaccataaacatcaacgcctttcttaaaaatcaatacacaagtatatatatatatatatatatgcagcagtttgggccgcctggctcgttgcgaactgtgtttagaccatttcttcctaacaaagacagccaactttgccaaatgggggatgatttaacaaaagagcatttgcgaaaaaagcacaatcgttgcacgaatgtacctaaccataaacatcaatgctttccttaaaatcaatacacagaagtatatttttttaaacctgcatatttagttagaagaaattcatgttagcaggcaatattaaactagggaaattgtcttgcattcattgcatgcagagtcaggttatatgcaacagtttgggccgcctggctcgttgcgaactaatttgccagaaatCTACGTaagtatgacataacattgaaggttgtgcaatgtaacagcaatatttagacttatggatgccacccattagataaaatacggaacggttccgtatttccggatttgaccatattaatgacctatggctcgtatttctgtgtgttattatattataattaagtctatgatttgatagagcagtctgaccgagcagtggtaggcagcagcaggctcgtaagcattcattcaaacagcactttcctgcgtttgccagcagctcttcgcaatgctccaagcattgcgctgtttatgacttcaagcctatcaactctcgagattaggctggcaatactaaagtacctattagaacatccaatagtcaaaaggtatatgaaatacaaatggtatagagagaaatagtcctataataactacaacctaaaacttcttacctgggaatattgaagactcgtgttaaaaggaaccaccagctttcatatgttctcatgttctgagcaaggaacttaaacattagcttttttacaaggcacatattgcacttttactttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttatttgagactaaa
>TU2422415
gtcatacccaaatctaactgcctgtagctcaagtcctatgtggacaactacaaataccgaggtgtctggttagactgaactctccttccaggctcacgttaagcatctccaatccaaaatctagaatcggcttcctatttcgcaacaaagcatccttcactaatgctgccaaacataccctagtaaaactgaccatcctaccgatcctggacttcagcgatgtaatttacaaaatagcctccaacactactcagcaaattggatgtagtctatcacagtgccatctgttttgccaccaaagccatatatactacccaccactgtgacctgtacgctctcgttggctggccctcgcttaatattcgtctccaaacccactggctccaagtcattACTAGGTAAAGCagcgccttatctcagctcacctgtcaccatagcagcacccacccgtagcacgcgctccagcaggtatatttcactgatcaCCCCCAAAGGCAActcttactttggccgcctttccttccagtgctctgctgccaatgactggaacgaattgcaaaaatcaatgAAGCTGGAgatttatatctccctcactaactttaagcatcagctgtcagagcagcttaccgatcatggcacctgtacatagcccatctgtaaagagcccacccaactacctcatccccatattgttttttttgttgcaccccagtatctctacttgcacattcatcttctgcccaTCTATCACTcgagtgtttaattgctaaattgtaattatttcgccgctatggcctatttattgctttacctccctaatctgaCTACATTTTAGATGTCgacaattaatcggaatggcccattaattagggctgatttcaagttttcataacaataggtaatcggcatttttggacacagatcatggccgattacattgcattccacgaggagactgcgtggcaggctgactacctgttatgcgagtgcagcaaggagccaaggtaaggtgctagctagcattaaacacatgttataaaaaacaatcattctTAACATaattactagttaactacacatggttaatgttgATGATATtcctagtttatctagcttgtcctgcgttgcatataatcgatgcggtgcctgttaatttatcattgaatcacagcctactttgccaaacggtgatttaacaagcgcattcgcaattcactgttgttgcaccaatgtgtacctaaccataaacatcaacgcctttcttaaaaatcaatacacaagtatatatatatatatatatatatgcagcagtttgggccgcctggctcgttgcgaactgtgtttagaccatttcttcctaacaaagacagccaactttgccaaatgggggatgatttaacaaaagagcatttgcgaaaaaagcacaatcgttgcacgaatgtacctaaccataaacatcaatgctttccttaaaatcaatacacagaagtatatttttttaaacctgcatatttagttagaagaaattcatgttagcaggcaatattaaactagggaaattgtcttgcattcattgcatgcagagtcaggttatatgcaacagtttgggccgcctggctcgttgcgaactaatttgccagaaatCTACGTaagtatgacataacattgaaggttgtgcaatgtaacagcaatatttagacttatggatgccacccattagataaaatacggaacggttccgtatttccggatttgaccatattaatgacctatggctcgtatttctgtgtgttattatattataattaagtctatgatttgatagagcagtctgaccgagcagtggtaggcagcagcaggctcgtaagcattcattcaaacagcactttcctgcgtttgccagcagctcttcgcaatgctccaagcattgcgctgtttatgacttcaagcctatcaactctcgagattaggctggcaatactaaagtacctattagaacatccaatagtcaaaaggtatatgaaatacaaatggtatagagagaaatagtcctataataactacaacctaaaacttcttacctgggaatattgaagactcgtgttaaaaggaaccaccagctttcatatgttctcatgttctgagcaaggaacttaaacattagcttttttacaaggcacatattgcacttttactttcttctccaacactttgtttttgcattatttaaaccaaattgaacatgtttcattatttatttgagactaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2422413 False 2267 lncRNA 0.40 2 23114710 23117051
TU2422415 True 2269 lncRNA 0.40 2 23114710 23117051

Neighbor

gene id symbol gene type direction distance location
LOC110508761 LOC106599440 coding upstream 10723 23102409 ~ 23103987 (+)
smg7 smg7 coding upstream 26889 23056778 ~ 23087821 (+)
lamc2 lamc2 coding upstream 72298 23024773 ~ 23042412 (+)
lamc1 LOC106599430 coding upstream 91984 22941732 ~ 23022726 (+)
dhx9 dhx9 coding upstream 180450 22914656 ~ 22934260 (+)
LOC110508282 LOC106599615 coding downstream 79964 23197015 ~ 23204478 (+)
LOC100505418 LOC100505418 coding downstream 87856 23204907 ~ 23211267 (+)
LOC110508768 LOC106599453 coding downstream 145819 23262870 ~ 23286417 (+)
zmynd11 zmy11 coding downstream 635256 23752307 ~ 23776713 (+)
LOC110508774 LOC106599485 coding downstream 984019 24101070 ~ 24137027 (+)
G2118342 NA non-coding upstream 322895 22791307 ~ 22791815 (+)
G2118333 NA non-coding upstream 330816 22783689 ~ 22783894 (+)
G2118330 NA non-coding upstream 332859 22781554 ~ 22781851 (+)
G2118128 NA non-coding upstream 444764 22669621 ~ 22669946 (+)
G2118024 NA non-coding upstream 574784 22539655 ~ 22539926 (+)
G2118530 NA non-coding downstream 11594 23128645 ~ 23159265 (+)
G2118573 NA non-coding downstream 42951 23160002 ~ 23162200 (+)
G2118577 NA non-coding downstream 51401 23168452 ~ 23169935 (+)
G2118658 NA non-coding downstream 184717 23301768 ~ 23355823 (+)
G2118712 NA non-coding downstream 319412 23436463 ~ 23457077 (+)
G2116347 NA other upstream 1739632 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2272707 20840508 ~ 20842019 (+)
G2115369 NA other upstream 2672541 20441733 ~ 20442169 (+)
G2118574 NA other downstream 46815 23163866 ~ 23164323 (+)
G2121837 NA other downstream 2603389 25720440 ~ 25721674 (+)
G2122177 NA other downstream 3240487 26357538 ~ 26374560 (+)
LOC110508797 LOC106599544 other downstream 3562762 26679791 ~ 26688506 (+)

Expression


Co-expression Network