G2118530


Basic Information

Item Value
gene id G2118530
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23128645 ~ 23159265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2422392
taacttccgacttcaactgtatattcaaaGGTATGGTatgatgtgagtacagtggaggtaagcctaggCATTAAGTGACGATGAGAAAGGTTTTGTCTCTAGACTCACCaattaagccaggtgaggtcaccgcatgtgtggggtgtggaacaaaagggctatctaaggcatattgggcagggatgggggctctacagtgaaataagacaatattcattaaccaaaacagcaatagacaaggcatattgacattagggagaggcatgtgtagccgagtgatcatagggtccaattaGTAGCAAGAGATGAGTCAAGGAGACATGGCGACAAGGCatttcagacagctagcaggccggggctagcagatgggccgcCGGCGACATCGCAacggaagagcctgttgaaaccacttCGGATGATtatgtcggcagaccagtcgtttGGGTTCGGTATGGCTCCATGTCGGCAGTAAAGgctccaggccaattggcaaaagaggtattgtagcccaagactTGGCTGGTggacctcttcggctagccgggagatgggcctagctcaaggctaactggtgcttgcttcgggacagagacgttagccaggagtagcatCTCGgattgctagctagctgcaatgatcCGGTGTAAATGTTCAGAacttgcggtaggaatccagagatgtggtagagaaaaagcagtccgatatgctctgggttgatatcatgaagaacactcaacatgtactgcactgaaaTAATGACtggtgattggttgaaagaaattgagaaaggcctcctgagtggagcagcggtctaaggcactgcatcttttccaacagtcttgaaggagttcccacatatgcggagcacttgttggctgcttttcctttactctgcggtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcatctgatgcagcactccatcactctccttggtcaaatagtcatttcagagcctggaggtgtgttgggtcattgtcctgttgaaaaaggaatgatagtcccactaagcgcaaaccagatgggatggtgtattgctgcagaatgctgtcaTAGCCTTGCTGGTTAATTGTTCCTTGACTTCTAAATCaatcacagacagtatcaccagcaaagcactaccCACAACCTCCAAcctccatcacacctcctcctccatgcttcatggtgggtactacacatgcagagatcatccgttcacctactctgcatcttacaaagacactgtggttggaaccaaaactcagaaatttggactcatcagacaaaaggacagatttccaccagatttccaccattgctcgtgtttcttggcccaaagtctctgggtcttcctttcctgtgggggtcctcatgagagccaattttaTCAGCTTGATGGATTTtgacgactgcacttgaagaatcttCAAGTTCAACAAAGTTCTTtaaattttccatattgactgaccttcattttatttatacttttttatttaactaggcaagtcagttaagatcaaattcttattttcaatgacggcctagaacagtgggttaactgccttgttcaggggcagaacaacagatttttaccttgtcggctcagggattcgatctcgcaacctttcggttactagtccaacgctctaaccactaggctacctgccacccccactaggctacctgtcgtttcttggcccaagcaagcagTATGGacccctgccttgtcacaacacaactgattggctcaaacgcactaaggaaatcaattccacaaattaactttgacaaggcacacctattaattaaaatgcattccgggtgattacctcatgaaactggttgagagaatgccaagagtctgcaaagctgtcatcaaggcaaagggt
>TU2422393
taacttccgacttcaactgtatattcaaaGGTATGGTatgatgtgagtacagtggaggtaagcctaggCATTAAGTGACGATGAGAAAGGTTTTGTCTCTAGACTCACCaattaagccaggtgaggtcaccgcatgtgtggggtgtggaacaaaagggctatctaaggcatattgggcagggatgggggctctacagtgaaataagacaatattcattaaccaaaacagcaatagacaaggcatattgacattagggagaggcatgtgtagccgagtgatcatagggtccaattaGTAGCAAGAGATGAGTCAAGGAGACATGGCGACAAGGCatttcagacagctagcaggccggggctagcagatgggccgcCGGCGACATCGCAacggaagagcctgttgaaaccacttCGGATGATtatgtcggcagaccagtcgtttGGGTTCGGTATGGCTCCATGTCGGCAGTAAAGgctccaggccaattggcaaaagaggtattgtagcccaagactTGGCTGGTggacCAACTGGAATGTTATCACAGCCTTTATTATGCTGGGGATACTCCAGTTGTGGAATGGTTGGTTGTCTGTTTGTGAAGGAAAGTCTGAAAGGGCTGTCACAAACATACTTGCTTTTAGATCTTTCCAATGCCTAATTTGTAGTAACCTTTATTacctaggcaagtcggttaagaacaaattcctatttacaatgacggcctaccccggccaaacccagacgacgctgggccaattgtgtgccgccctatgggactcccaatcacagccggaaaGGATGCagcctgtagtgatgcctcttgcactgagatgcagtgcctagaccactgcgccactcgggagcccttatTGGCCTGTGGGTGGAGTTTTTTATGTTGAATGTGGCAAAAAGTCCTGCAGGTCACGTCCTACGTATTTCTTTATATTTCTTTGGAAATCGGGTAGGATTATAATTTGGCCGATATTAACTGTAGGTTGTTGGCATTGATTACAGACTGGAGCACAcccatcaggagatgtggagagtGACAGAACCTGTGGGGGGACCCCAGGTTACTTAGAGGTTAGTTAGTGTAGCGAGGTCATATACTATGACCAAGAAGTGTTGGTTGTGAGGGACATAGCACAGctccacacacatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttttgtccatgaaaataacataaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggcatattttttatggaatatctacataggtccattatcagcaactatcactgCTGTGTTCCggtgacacgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttctgcaattatgttagcacagctgaaaacggttgttctgattaaagaatctggagcatcagcatttgtgggttcgattacaggctcaaaaaggCCAGAAACAAATCATTTAACaaactatttaatgaagttgccagttgaggacttgtgaggcgtctgtttctcaaactagacactaatatacttgtcctctagctcagttgtgcaccggggcctcccactcttctttctattctggttagagccagtttgagctgttctgtgaatggagtagtacacagcgttgtacaagatcttcagtttcttggtaatttctcgcatggaatagccttcatttctcagaacaagaatagactgacgagtttcagaagaaagtctttgtttctggccattgtagagctagggagagagTGTCAGTGTCCAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2422392 False 1923 lncRNA 0.47 2 23128645 23130761
TU2422393 True 1870 lncRNA 0.44 2 23128645 23159265

Neighbor

gene id symbol gene type direction distance location
LOC110508761 LOC106599440 coding upstream 24658 23102409 ~ 23103987 (+)
smg7 smg7 coding upstream 40824 23056778 ~ 23087821 (+)
lamc2 lamc2 coding upstream 86233 23024773 ~ 23042412 (+)
lamc1 LOC106599430 coding upstream 105919 22941732 ~ 23022726 (+)
dhx9 dhx9 coding upstream 194385 22914656 ~ 22934260 (+)
LOC110508282 LOC106599615 coding downstream 37750 23197015 ~ 23204478 (+)
LOC100505418 LOC100505418 coding downstream 45642 23204907 ~ 23211267 (+)
LOC110508768 LOC106599453 coding downstream 103605 23262870 ~ 23286417 (+)
zmynd11 zmy11 coding downstream 593042 23752307 ~ 23776713 (+)
LOC110508774 LOC106599485 coding downstream 941805 24101070 ~ 24137027 (+)
G2118550 NA non-coding upstream 11594 23114710 ~ 23117051 (+)
G2118342 NA non-coding upstream 336830 22791307 ~ 22791815 (+)
G2118333 NA non-coding upstream 344751 22783689 ~ 22783894 (+)
G2118330 NA non-coding upstream 346794 22781554 ~ 22781851 (+)
G2118128 NA non-coding upstream 458699 22669621 ~ 22669946 (+)
G2118573 NA non-coding downstream 737 23160002 ~ 23162200 (+)
G2118577 NA non-coding downstream 9187 23168452 ~ 23169935 (+)
G2118658 NA non-coding downstream 142503 23301768 ~ 23355823 (+)
G2118712 NA non-coding downstream 277198 23436463 ~ 23457077 (+)
G2118881 NA non-coding downstream 493692 23652957 ~ 23653169 (+)
G2116347 NA other upstream 1753567 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2286642 20840508 ~ 20842019 (+)
G2115369 NA other upstream 2686476 20441733 ~ 20442169 (+)
G2118574 NA other downstream 4601 23163866 ~ 23164323 (+)
G2121837 NA other downstream 2561175 25720440 ~ 25721674 (+)
G2122177 NA other downstream 3198273 26357538 ~ 26374560 (+)
LOC110508797 LOC106599544 other downstream 3520548 26679791 ~ 26688506 (+)

Expression


Co-expression Network