G2118712


Basic Information

Item Value
gene id G2118712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23436463 ~ 23457077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2422606
agatgaaaggTTGAAAGCTTTTTGCAGTGGTTACAGTATGGGACACATAACATGGCCCGCTTTAACTCTGAATgtcttccaaatggcaccctattccctttatagtgcactacttttgaccagggaccaaaGGAAAAGAAGTGTAATAGAAAGAGAATCAGGTGCCATTTTGGAAGCACAGCCGTGATAGGTAAAATAAGTTTATGCCAATATGTAATATAACAATCCACTATCTTCCCCTCTGTACTTGCACTACTATTCTTCAGAAATGAATGTCTCAAATGGCATGATTATATATCCTTGGCTTGTCAAAGTAAATAGTAAATCATATCCTTGGCTTTCTTCATGGTGACATGATATATTTTGAGGCTGAAGGAGATACATTTGGGGAATAATAGTTTCAAAAAGCCATGTGCGAGTGTATGCAAAAAAAACAGGTCATATCATCTGCAATTCAGAAAATAGTGGGTGTACAAAAAACAGAATCCAGTGGACAAACATGAAAGCTTGACCCAAGATTTTGTGATCTAATGGCATGAGTCTAGTCAAAGCAGAAAGTGTTGGGGTAGAGCTGTAGGCCCGCGTGACTGTACAGGAAacaagcgtctgctaaatggcatatattattattatttagctGACAGTACTCCTGTAGTGCAGACAAACCTGCCTGGTCAGCATCCAAAATGGCaaccttttccctacatagtgcacttgttttgaccagagctctggtcaaaataagttATCTATTGTATATAAGGAAAGggttgccatttggaacgcagatATGGACTCAGTTGTTAATAAGACACAGGGACATCCAGTGGCAGCTTATATTCACACTTAAGCCATTGATGCTACATGTACATCTAGGGCTTTATTCAATCCGTAGCACCGATGATCCACTTTATAGCATGATTGAAAatgaaaggcaatgttcccgcggtTGCGGAGGCTGCATTCACGGTAAAACTGCATTAACGGTAAACGCTGGATATGTCGACTAAATTAGAAATGACCTTCACATTTGAACCCAGATCTTCTGTGATACTTtggcgatacggattgaatccagaCCCTAGATTAAATGAACTGCTTTATTTACAAAATGACAATATCGTTTTcattgtacatacagtacaccaaTTCATAGAACTGCTTTACTTGAGGCAGGCATTAGCTAGTTTAGTTTACTGACATTAGTTAAGTTTACTCACAATCGTTGTCCACAACATACAATTATTTGTCCAGGTCTGGACAAGCTGAAGAAACACATATTGCTTGGTGTAATTATCACTATGGTAACTAGAATTAACATCAGCATCATTGTTATCAGTGTTCACTTGACCTAATTAAGCAgttttaatttttaaaattttttaaTACACATTACATGGTATGATTTAGTACACCGCATAATAGGATCAAAGTAAAAACAAATATTCAACTTAAATATGCCATATGATACAGATGTTGTGACCAAGATaataatttacacacacacaaaaacaatatTTCTGTCATTGATATATTCTAGTAATTTAACAGATAAACATGTTTTTCAATCAGTAAAAGTCTTGATGCACTAAATTGTCTGTTTGGAAACAAGCTCCATAGGTTCACAatagatgttttttttattatacaCGACTAAGATCAGGTCATGCTCTCTCGCACAACATCCACAaagacagagaggtggagagaaggagtgggGGAAAGAAAGCGTGGGCGAGAGAAGGAGAACAGGAGGGAGGTCCCTGGGGAGATCTGCTGAGGCTTGGTAGTGGGTAAACCTCTCACTGTGGAAGAGCTTTGAGTATGGCGTTCACCTCCTCCGCAACAGCTGTCAATGCAAACTCAAACTGCTCCTGAGGTGGagtaagagagggaggagagggaggagagggagagagagatagaggaagggggagagcgagagagtgggggagggggagagagtgaggggagag
>TU2422607
agatgaaaggTTGAAAGCTTTTTGCAGTGGTTACAGTATGGGACACATAACATGGCCCGCTTTAACTCTGAATgtcttccaaatggcaccctattccctttatagtgcactacttttgaccagggaccaaaGGAAAAGAAGTGTAATAGAAAGAGAATCAGGTGCCATTTTGGAAGCACAGCCGTGATAGGTAAAATAAGTTTATGCCAATATGTAATATAACAATCCACTATCTTCCCCTCTGTACTTGCACTACTATTCTTCAGAAATGAATGTCTCAAATGGCATGATTATATATCCTTGGCTTGTCAAAGTAAATAGTAAATCATATCCTTGGCTTTCTTCATGGTGACATGATATATTTTGAGGCTGAAGGAGATACATTTGGGGAATAATAGTTTCAAAAAGCCATGTGCGAGTGTATGCAAAAAAAACAGGTCATATCATCTGCAATTCAGAAAATAGTGGGTGTACAAAAAACAGAATCCAGTGGACAAACATGAAAGCTTGACCCAAGATTTTGTGATCTAATGGCATGAGTCTAGTCAAAGCAGAAAGTGTTGGGGTAGAGCTGTAGGCCCGCGTGACTGTACAGGAAacaagcgtctgctaaatggcatatattattattatttagctGACAGTACTCCTGTAGTGCAGACAAACCTGCCTGGTCAGCATCCAAAATGGCaaccttttccctacatagtgcacttgttttgaccagagctctggtcaaaataagttATCTATTGTATATAAGGAAAGggttgccatttggaacgcagatATGGACTCAGTTGTTAATAAGACACAGGGACATCCAGTGGCAGCTTATATTCACACTTAAGCCATTGATGCTACATGTACATCTAGGGCTTTATTCAATCCGTAGCACCGATGATCCACTTTATAGCATGATTGAAAatgaaaggcaatgttcccgcggtTGCGGAGGCTGCATTCACGGTAAAACTGCATTAACGGTAAACGCTGGATATGTCGACTAAATTAGAAATGACCTTCACATTTGAACCCAGATCTTCTGTGATACTTtggcgatacggattgaatccagaCCCTAGATTAAATGAACTGCTTTATTTACAAAATGACAATATCGTTTTcattgtacatacagtacaccaaTTCATAGAACTGCTTTACTTGAGGCAGGCATTAGCTAGTTTAGTTTACTGACATTAGTTAAGTTTACTCACAATCGTTGTCCACAACATACAATTATTTGTCCAGGTCTGGACAAGCTGAAGAAACACATATTGCTTGGTGTAATTATCACTATGGTAACTAGAATTAACATCAGCATCATTGTTATCAGTGTTCACTTGACCTAATTAAGCAggtTTAATTTTTTCATCCTgatcaaagctctaatcaaatccagacatattTGTATGCTCTATAATtcttttgaatgacacttccCGTTTTGGCGGGAAATACCGATTTACCCGAGAGAAAAGTGATTTACTTTCAGGTTGTAACATTTGTAAAATATCaggaaaatattcaaccctactacagtacttacagttgaaatcggaagtttacatacaccttagccgaaAATAAATTtaaacatttaatcctagtaaaaattccctgccttaggtcagttaggatcaccactttattttaagaatctgaaatgtcagaataatagtagagagaatgatttatttcagcttttatttctttcatcacattccccagtgggtcagacgtttacatacactcaattagtatttggtagcattgcgtttaaattgtttaacttaggtcaaacgtttagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacaagctttttcagttctgcccacacattttctatacgattgatgtcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacacctttggaagtatacttggggtcattgtccatttggaagacccatttgcaaccaagcattaatttcctgactgatgccttgagatgttgcttcaatatatccacataattttctactctcatgatgccatctattttctgaagtgcaccagtccctctacagcaaagcacccccacaaaattatgctgccacccctgtgcttcacggttggaatggtgttcttcggctagcctccccctttttccttcaaacataacaatggtctttatggccaaactgttttatttttgtttcatcagaggacatttcaccaaaaagtacgatatttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2422606 False 1976 lncRNA 0.40 2 23436463 23446051
TU2422607 True 2349 lncRNA 0.39 3 23436463 23457077

Neighbor

gene id symbol gene type direction distance location
LOC110508768 LOC106599453 coding upstream 150046 23262870 ~ 23286417 (+)
LOC100505418 LOC100505418 coding upstream 225196 23204907 ~ 23211267 (+)
LOC110508282 LOC106599615 coding upstream 231985 23197015 ~ 23204478 (+)
LOC110508761 LOC106599440 coding upstream 332476 23102409 ~ 23103987 (+)
smg7 smg7 coding upstream 348642 23056778 ~ 23087821 (+)
zmynd11 zmy11 coding downstream 295230 23752307 ~ 23776713 (+)
LOC110508774 LOC106599485 coding downstream 643993 24101070 ~ 24137027 (+)
LOC110508777 k6pp coding downstream 734213 24191290 ~ 24230123 (+)
LOC110508779 LOC106599491 coding downstream 1152402 24609479 ~ 24611957 (+)
LOC110508784 LOC106599503 coding downstream 1230408 24687485 ~ 24915445 (+)
G2118658 NA non-coding upstream 80640 23301768 ~ 23355823 (+)
G2118532 NA non-coding upstream 234677 23077679 ~ 23201786 (+)
G2118577 NA non-coding upstream 266528 23168452 ~ 23169935 (+)
G2118573 NA non-coding upstream 274263 23160002 ~ 23162200 (+)
G2118530 NA non-coding upstream 277198 23128645 ~ 23159265 (+)
G2118881 NA non-coding downstream 195880 23652957 ~ 23653169 (+)
G2118942 NA non-coding downstream 287279 23744356 ~ 23744578 (+)
G2118953 NA non-coding downstream 306535 23763612 ~ 23764826 (+)
G2118957 NA non-coding downstream 330020 23787097 ~ 23787325 (+)
G2118959 LOC106599479 non-coding downstream 337739 23794816 ~ 23795420 (+)
G2118574 NA other upstream 272140 23163866 ~ 23164323 (+)
G2116347 NA other upstream 2061385 21374495 ~ 21375078 (+)
LOC110508722 LOC106569260 other upstream 2594460 20840508 ~ 20842019 (+)
G2121837 NA other downstream 2263363 25720440 ~ 25721674 (+)
G2122177 NA other downstream 2900461 26357538 ~ 26374560 (+)
LOC110508797 LOC106599544 other downstream 3222736 26679791 ~ 26688506 (+)
G2123101 NA other downstream 3485123 26942200 ~ 26945187 (+)

Expression


Co-expression Network