G2121395 (LOC106599513)


Basic Information

Item Value
gene id G2121395
gene name LOC106599513
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25104054 ~ 25108200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2425579
TTCTTTGGAATGTAGTAGTCATTGATCAAAGTCAGAAACAACATAGACAGATGGGTCTTGAAGCTGACCAGGgagtcaaatggcaccctattccctacatcgtgcactacttttgaccagagctctataggtgcactatatagggaatagggacatTTGGGACGGAGTCCAAGTAAAGAAACATTACTTGAGTCATTAAGGCCTCAACTGCTTAcgtattttttctttttttatctgGGACTGCAAATTACAGAAGCAGTATTGAAAATGGAACATTTTGTAGAAAAAAAAATGGCACAGACATTTGTGACCGTACAAAAAACACAAGGTGATATAACATACCAAGTTAAACATTACGTAAGTAAAGAGACATGTATAGCTTTTTCAATAACGAAAAACATCTCCATAATTGTACATTTCAGAACTATATCATCTGAAACCATATAAAAGAGTTATCTGTAACACTGTCTTATCCTTCTTttgctttctttctcttttttcacAAGTGAATATCATAAACAACACAAAGATCTTTTAAATATATCAGTGCAACATTGTTTTCACATCTAGTGCTGCAGCATCCTTTCCTGTTGACGAAGACAACACCAAAACATTATGCCTTTACAAGGGGtggaaccatagaaatagaatgactcaTTTGAATTCCAATCATTCTAATCCTATGGAATGTGGAATACTGTTGTGAGCTCGAAGCAGAACTATGAAACAGCTGTTTAACTAGCTACAACCGCATGAGGAAAACATGAAGGAATCTAAACATAGAAGCTCATAGACCCCGTCGGAAGGAATAAGCTACATCACATCCATTGATTAAACTTTGGACCTATGTCTTCGCCATTTCATACAGTGCTTTGTTTTGGCTGAACTCTTCACGTTAACATTCAATACAGACAAAAAGGAGAGCAAAGGggatgtaggctacagtacataaaaacagcatgatgACACACGGGTCTCTTTCATTCCATCAAGGGCCATCATTCTACCACAGACATGTAGGGCCGGTTTCCCAGACATAGGTTAAGCCTAGTCCAGGACTTGAAAGCATTCTCAAAGAGATTCTGAATCTATGTCTGAGAAACTGGCCCATAATGTCCCAGGTATTGTCATAGCATTTTCTTCGTAGAGATGCTTCAGCCACCCAGTCTGTTGTCTGACTACGTCTCAAATACCACCATATtccatatatagtacactacttttgtatagcccatagggctctggtagaaagtagtgcactctttagggaatagggtgtcattttggacacTTCACTCTCTCCTTGTTAGGCCTTTGTAGCCAATTGTTGCCCCTATTAATAAGGCTCAATACTGATGATCATGGCTGAATCCGAACATCTCTCAAAAGGCCATAACCATTGGCTTTAATAACCCTCATTTCCCAGGCAGCATTGGGAGAGCACCAATGGAACATAACAACACAAAATGCCTGTTACATACATGATGACAGCCAGAAAACATTGCCTATGATACATAAACCACAAAGAAAGGATACTGCAGCATTTTGTCTCTTTTTATAAAGGCGCTCAAATATATTAAAACCTATGTACAATAAGTTGGATGTGTCATGTGCTATGGAGGGATGGCATGGACTCCTGCCAATCTGAACCTGCTCTACCAACCTAACGTACTGCTATGATCAAAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAAAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAATCAGACTCTACCAGCTGATGCCTAACGTACTGCATTGATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGACTCTACAAGTCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGACTCCACCAGCAGATACCTAACATACTGCTATGATCAGAATCAGACTCCACCAGCCGATGcctaacatactgctgtgatCAGAACAGAATCAGACTCCACCAGCCGTTGCCTTACATACTGCTATGATCAGAATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGTGGAGAAAAGGCAACAGAAACTTTCAAAAAGGCACTGTGGAACTAGACACAGGTCTAGGGCCAGGGCAAGCACCCTCTGgatgcatacacacatgcatgcacatacacttgctcacgcacgcacatgcatgcgtacatgcacgcacacacacgcacaaacaagaTGCACAAATCGATGCAGACATACAAACTGATAACATGGCCAGCCGAAGAGCCACGTGTCAGGATAGTGAATATACGTTTCTATGCTCTTTCTGTGAATAATAATGACCTctgatgaaaaataaaatatccttccgaaagaaaaataacaaaaacatgataAATATTTCCATCTCAATTGGTCTCATCACCAGCATCTGATTACAGAAAAACAAAGCACGtcgcaaaacaaacaaaaaacaaaacaatcatTTTTGCTGTACACGTTTTATTTATACACAGTGCCCACTACGGGTAGGTTCCTTTCACTGCAGCTCCTGAGAATAGCATGGCTCAGTCACAACCTCCCACCATCACTATAGCcagctgcatcccaaatgccaccctatcccctacatagtgcactatataaggaataggacAACACTTCAGTCACAACTCACAACCCTCTGTCCGGTGGTCTAGTTCCTCCAGCCATGAGGCTGCTTGTGTTCTCTTCCCTCAAAGGATGACGCTCATGCCTCTGAGTAGCTGTTCTGTGCATTCAGCTTGCTGTCCTTCTTTAGCTTGACGCCGTCCACCAGCTCAAAGTTATAGTTCTCCAGAGCCGACAAGTTCCTGCTGTCGGACATGTGTCCGTGCGAGCAGGCACAGTAGAGGACGACACCACAGATAGCTCCCAGGAAAACCCCTAGTGCGCTCATAGCGATGATGGTGATGAGAATGGGGTCCAGGGTTTTCAGCATGTTGCCTGGGCCACCCAGCTCGCTATTCTCCACTTCCTCTGGGTAGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2425579 True 3113 lncRNA 0.43 2 25104054 25108200

Neighbor

gene id symbol gene type direction distance location
LOC110508783 LOC106599501 coding downstream 426902 24664869 ~ 24677152 (-)
LOC110508781 LOC105017795 coding downstream 446187 24628922 ~ 24657867 (-)
LOC110508780 NA coding downstream 476904 24623953 ~ 24627150 (-)
LOC118944874 NA coding downstream 556658 24545663 ~ 24547396 (-)
LOC118944850 NA coding downstream 613728 24487395 ~ 24490326 (-)
LOC110508788 LOC106599520 coding upstream 107142 25215342 ~ 25232530 (-)
LOC110508789 LOC106599527 coding upstream 236250 25344450 ~ 25412332 (-)
LOC110508791 LOC106568850 coding upstream 574118 25677135 ~ 26069268 (-)
LOC110508193 LOC106599530 coding upstream 1022227 26130427 ~ 26266904 (-)
LOC110508194 LOC106599532 coding upstream 1187574 26295774 ~ 26558418 (-)
G2121361 NA non-coding downstream 90044 25004416 ~ 25014010 (-)
G2120993 NA non-coding downstream 153106 24950530 ~ 24950948 (-)
G2120982 NA non-coding downstream 162799 24940881 ~ 24941255 (-)
G2120928 NA non-coding downstream 238849 24863091 ~ 24865205 (-)
G2120929 NA non-coding downstream 240058 24863627 ~ 24863996 (-)
G2121417 NA non-coding upstream 9309 25117509 ~ 25117732 (-)
G2121441 NA non-coding upstream 47977 25156177 ~ 25157733 (-)
G2121438 NA non-coding upstream 93714 25201914 ~ 25203317 (-)
G2121436 NA non-coding upstream 100888 25209088 ~ 25212487 (-)
G2121549 NA non-coding upstream 221242 25329442 ~ 25330859 (-)
G2120836 NA other downstream 369067 24730674 ~ 24734987 (-)
LOC110508185 LOC106569033 other downstream 1774439 23317575 ~ 23353162 (-)
G2118200 brinp2 other downstream 2496248 22594533 ~ 22607806 (-)
LOC110508740 kiaa0040 other downstream 3155796 21942981 ~ 21948557 (-)
G2121444 LOC106599515 other upstream 35862 25144062 ~ 25148520 (-)
G2121457 NA other upstream 90048 25198248 ~ 25274626 (-)
G2122515 NA other upstream 838533 25946733 ~ 25950453 (-)
G2125203 LOC106599130 other upstream 3436741 28544941 ~ 28551514 (-)

Expression


Co-expression Network