G2122255 (LOC106599532)


Basic Information

Item Value
gene id G2122255
gene name LOC106599532
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26482926 ~ 26483612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2426541
GGTCAGTGTTGGCCCGTGGAGCTGTGCATGGAGTATAGCCTCGTTCACGTGCCCCCTGACCCCCAGCAGGGCCAGCTCCAGGCTGTGTTGTCCAGCCACCGCGTGGGTCAGCTCCTCGAGTGCCGCCACATACCTCCGCCACGGCCCATCCAGCTCGGCCACGCTCGCCAAGCAACCGCGCATCACGTTCAAGCAGTAGCCCATGCACGGCTTGATCAGCGTCAGCCCGCGACAGTGCGAGCAGTACTGCATCTTGGTCAAGCCCCGTAAACACTCTTTGGTGAGGGAAACGTGTTCTGTGGCGTTCATGACCTCAGTGCCTTCGGCGAGGGCGAGGGATAGGGCTCGCCCGGCGCCCAGGGCGCGCCTGAGTTCTTGGGCAAGCGTATCGGGATGAGGGCCAAACGGGTTGACGTCTTGCCGGGTCGCGCGGAGACACTCGCCCCTCTTGCCCGCCGCACCCATGCCGGGGTTGACCAAGCGTACATAGACGAGTGGGAAGAGGTTGTCGTAGAAACGTGTGATTGCGGCCTCGAGGGAGAGGTTGTGTCCACGGATGtaaagggagagggaagagaagaggacatTGACATGAGGGAGGGCCTCGCGGGAGAGGGGCGAGTAGGTGTCCTCTAGCAGGGATGAGAGGTGGCCCTGGGAGAAGGAGAGCAGGTACTGGAAGGTGTC

Function

NR:

description
glypican-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2426541 True 687 lncRNA 0.63 1 26482926 26483612

Neighbor

gene id symbol gene type direction distance location
LOC110508792 fam227a coding upstream 365827 26099457 ~ 26117099 (+)
LOC110508192 LOC106599523 coding upstream 1151701 25283026 ~ 25331225 (+)
LOC118944876 NA coding upstream 1217016 25264448 ~ 25265910 (+)
LOC110508787 LOC106599517 coding upstream 1279606 25160851 ~ 25203320 (+)
LOC110508785 LOC106599515 coding upstream 1325185 25118403 ~ 25157741 (+)
trnaw-cca-61 NA coding downstream 141630 26625242 ~ 26625313 (+)
LOC110508795 LOC106599535 coding downstream 144740 26628352 ~ 26656110 (+)
LOC110508796 LOC106599541 coding downstream 173003 26656615 ~ 26675681 (+)
LOC110508797 LOC106599544 coding downstream 196179 26679791 ~ 26688506 (+)
LOC110508800 LOC106599548 coding downstream 223765 26707377 ~ 26709568 (+)
G2122236 NA non-coding upstream 26429 26456226 ~ 26456497 (+)
G2122235 NA non-coding upstream 27405 26455214 ~ 26455521 (+)
G2122234 NA non-coding upstream 27944 26454568 ~ 26454982 (+)
G2122229 NA non-coding upstream 36393 26446331 ~ 26446533 (+)
G2122227 NA non-coding upstream 37626 26445100 ~ 26445300 (+)
G2122259 NA non-coding downstream 7527 26491139 ~ 26491382 (+)
G2122262 NA non-coding downstream 11200 26494812 ~ 26495012 (+)
G2122277 NA non-coding downstream 52595 26536207 ~ 26536595 (+)
G2122290 NA non-coding downstream 74293 26557905 ~ 26558422 (+)
G2122851 NA non-coding downstream 134975 26618587 ~ 26618957 (+)
G2122177 NA other upstream 108366 26357538 ~ 26374560 (+)
G2121837 NA other upstream 761252 25720440 ~ 25721674 (+)
LOC110508774 LOC106599485 other upstream 2372216 24101070 ~ 24137027 (+)
G2118574 NA other upstream 3318603 23163866 ~ 23164323 (+)
LOC110508761 LOC106599440 other upstream 3379593 23102409 ~ 23103987 (+)
G2123101 NA other downstream 458588 26942200 ~ 26945187 (+)
G2123174 NA other downstream 617700 27101312 ~ 27104270 (+)
G2123170 NA other downstream 622422 27106034 ~ 27109282 (+)
LOC110508827 LOC106599210 other downstream 1236988 27720549 ~ 27725061 (+)

Expression


Co-expression Network