G2123273 (LOC106599558)


Basic Information

Item Value
gene id G2123273
gene name LOC106599558
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26907953 ~ 26911066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2427696
ccctttgagcatggtgaagtttttaattacactttggatggtgtacaatacacccagtcaatacaaagatacaCGTGTCCTTAACtccgttgccggagaggaaggaaagcgCTCAGGGATtctaccatgaggccaatggtaactttaaaacagttagtttaatggttgtgataggagaaaactgaggatggatcaacaatatagttgatccatcctcaaatattccaaaacatcctgtttgtaaaactgcaaaaaatgtggcaaattaattttatgtcctgaataaaaaTGCACATTACTgagtattttcaagcatggttgtggctgcgtcatgttaagggtatgcttgtcatcagcaaggactagggaggttttttttaggataaaaagaaacggaatagagctaagcacaggcaaaatcctagaggaaaacctggttgtctgatttccaacagacactgggagacaaattcacctttcagcaggacaataacctaaaacataatGCCAAATATAGCCTGgaattgaatgttcctgagaaaatccatggcaagacttaaaaatgGCTGCCCTAGCAACAACCAACttgagagcttgaagaattaaaaataattgtggcaaatattgtacaatgctATTAGAAAtgtacccagaaagattcacagctgtaatcaaagccaaaggtgattctaacatgtattgactcaggggtgtgaatacttatatagaggagagatttctgtatttcattatggtgtattctgtgtagatgggtgaggaaaaaaTCTCATCTATTTTGAACATTCTGTAGACACTATGTAACTTAGTGATGTCTGGCCTTTACTTATCATCCTTCTCTTTGTCTCAGCTCTCGTCTCCCTGCACTTTCCCGATGTTACTATGTATTTGAGAGTTGAAACTGGATTACTGAGAAAAGTTTTGTACATTTCTGTGAAGTTGTATTTCATTGGTTCTCTATGGATTGTTAGACCATGCTGTGAAGTCATGTCATGGGATTCGTCCTGGATAAATAaacatgatttaaaaaataaaataaaagatttTCATTTGCACATCATTTTTCCCCCATCTCTGATAGGAGACAAGGGGAAATTGCCCAACACACAGAACAGAGTTACATCTCAAAGTTTTGTTAATTTAATCCATCACTGATGTACAAAAAACAAATTGTCATGTTCTCTGAAAAATAACAATGGCTGTTAATCTCAAATGCATATTCTCCTATGCACAAGAGTGTGCGTAGATTTCCGTCAATCTATTTTCATATGTACAACGCATATATAGGCCGGGGCAATATAAAGAGAGAAACGTCAGACTTATTGCTTAACTAGATGTTCTGTTAATTAGCTTATTTCACTCTACATTAAACTCATTTTACATGGCGAGCACTACTTCACATTCTATCTGCATACAAAAGACAAATTATCAACTGATTATTCTTTAAGATGAAAATGTACCAGTTGTGATAGCAtagttttacatagaattaaaatGTATTATGGCTCAAAACTATTGAAGTGATTAATGATTTAACATGCATCTTGAATGACAGTGGAGAACAGTCACACACAGTTTAATCTTTCAACCAAGGCTTTTATTGCTTATCTGCGGACGTGGAGAGTTATGACTGTGCTTCTAAGTTGGTAGTACATATTTCTAAAATGGTTGTGAGGCCAGGCAGACTGTATAAatccttttcagtgtgtgtgcgcTGTGTTTTAGGAATATTATTTTGTATGTTGTTGAACAAATATGTATTactatgtgagtgtgtgcgtgcttaACTTCGATGTTTCCTGTCATTAACACTAAAATCATTCCAGAGACATGTTGTACAGTAGGAACGATGTTTGAAAAATCATTACCTATCGCTAGGAACGTAATGATACAAAATGTACTGTGACCAAAACACTGTTACAAGAAACTCTCTAACTTCTGTCCTACGACCTTAACGCCAGACATGTACTTTGAGTTAAATGCATGTTAATTACAATGTGCTTCACAAATGTTCTTAACCCTGTGGTGGTGGCATTTTATGACTGAGCGATGCCAATGCATTGGTCCTTTCTCAGCTGCCTTAAGGTGGTTACTTATCATTTTGTCTTAAATATCCCTTTTCCATCCCACTTTAAAGTCCTTTCCTCAGATATGAATGTAGCTACCATGTAAATACAGCACTTATATTTTATAGGCCATTTAATCCAAAGTGggacccccctttctctctcctctgctctatcCCTTTGTCTGGTCATGTTGttccttctcaccctctctcggGGGAAAGTAGTGTCAATATCAGATGTCTGCATGGGCAATTCTAACAATccttgaccttgtggggactaacaaaatgtccccagttggtcataTTTTCGTTTGTTTACTATtgttgtgaggacttctggtctccacaagaatagttaaacacatccacacaccAATACATCGTGGACACAGACATCCAGCTTGGAGATTGAGGTGAAAATGACCTGTAAGGTTGTAGAAACCTCAACACTTCTGTCATTCCGATTGGTCCTCAGTGGTACTTCGCTCACACTGCAGTTCTGATTGGTCCATTTGCTGTATGTTCTCGGGCGGGGTTCCATGTTCCTTCGCCGGCTCCAATTGATAAGTCTCAGGGAGGTGGGGGTGGTCAAAATCACAGGCTAGCTCTGATTCGTCAGTGTGGGAAGGGCTGCACTCTAAGATAAACTCTTCTGTTTGGTCCTCTGTTAGTGAGAGGCTTTCCTGAAGAACCAATTCCGATGGCAGGTCCGTATTGTCAGCGGGGCTGGTTTCAAACTCCAAATCTGATTGGTCCTGTGTGAAGTGGACAGGACTCTCCTCATACATATCGTTCAATTGGTCCTCCATGTCAGGCGGGGTGGGGTCCCGTGGTAATGAGAGGCCTCTGTGGCGGTTCCAAAGCTTGTGTAGCTCTGTCACCTCCGAAACGTTGGTGGTGTTGTTGCCGCTGTCACGGAAACTGGCCAGTGGGGGGCGAACTTTCACTCCTGTCACGGTCACTGAGCC

Function

NR:

description
chloride channel protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2427696 True 3057 lncRNA 0.40 3 26907953 26911066

Neighbor

gene id symbol gene type direction distance location
LOC110508805 LOC106599556 coding downstream 65100 26837942 ~ 26842853 (-)
thpo NA coding downstream 144324 26757098 ~ 26763629 (-)
LOC110508801 LOC106599551 coding downstream 166082 26714593 ~ 26741871 (-)
LOC110508799 LOC106599547 coding downstream 205035 26695459 ~ 26702918 (-)
trnap-agg-158 NA coding downstream 281401 26626481 ~ 26626552 (-)
LOC118944878 NA coding upstream 1862 26912928 ~ 26920425 (-)
LOC110508196 LOC100380746 coding upstream 14203 26925269 ~ 26973311 (-)
LOC118944904 NA coding upstream 16588 26927654 ~ 26927784 (-)
LOC118944898 NA coding upstream 17218 26928284 ~ 26928407 (-)
tfa LOC100136298 coding upstream 63372 26974438 ~ 26998393 (-)
G2123218 NA non-coding downstream 76486 26806191 ~ 26831467 (-)
G2123004 NA non-coding downstream 185760 26720278 ~ 26722193 (-)
G2122977 NA non-coding downstream 195024 26712155 ~ 26712929 (-)
G2122989 NA non-coding downstream 214702 26693001 ~ 26693251 (-)
G2123275 NA non-coding upstream 693 26911759 ~ 26912063 (-)
G2123281 NA non-coding upstream 10340 26921406 ~ 26921695 (-)
G2123290 NA non-coding upstream 25379 26936445 ~ 26937469 (-)
G2123309 NA non-coding upstream 112824 27023890 ~ 27075887 (-)
LOC110508791 LOC106568850 other downstream 838744 25677135 ~ 26069268 (-)
G2122515 NA other downstream 957500 25946733 ~ 25950453 (-)
G2121457 NA other downstream 1633327 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 1759433 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2172966 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 1633875 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1715989 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1751642 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1781073 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1974402 28885468 ~ 28885854 (-)

Expression


Co-expression Network