G2124325


Basic Information

Item Value
gene id G2124325
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27569649 ~ 27570575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2428861
AGCCGAGCCCATACAGCACCAAATGGACGTGGATAATCCATTATTTTGCGcgatgttgttttgttgttgctgtatTTAATAGCATTGCATCTGTAGCCAAATTAATGTCGTTTGGTTCATCATAATAAATATAATTGCCCATGTAGATTTCACTCTGGTTCGTTGTCGTTGCAGAGGGACGTACGATTTGTGATTTCACGCCAAAGTTATTTGGTGTGGCACAGAGGAGCTGTCCACGACGCGTGGTGCTGAACTTGACCAGCAGCGGAATGAGCGGCCATAGTGTCGTCATCATGGTGTTAGCAAGTCTCCCTTTGGCTGCGTAGAGCGACTCTGGGTGGATGTTTacatcaaaacaaaacaaactcaACTCTTTTGTAATTGAAAGGCAAGAGTAATCTCAAATGCTGTCCTGGTGTGTTAGGCCCACTGTTTTTTGAGAATCACAGTTGTTTAACCTCATGCCTAATAAATATTTATTGAAAAAAAGTTGTGTTGCGGTAtttaagatctctctctctctctctctctctctctctctcacacacacacaaatatacagtgccttcggaaagtattcagaccccttgactttttccacattttgttacattacaggcttattctaaaatatatatttttaatctacacacaataccccataatgac
>TU2428860
AGCCGAGCCCATACAGCACCAAATGGACGTGGATAATCCATTATTTTGCGcgatgttgttttgttgttgctgtatTTAATAGCATTGCATCTGTAGCCAAATTAATGTCGTTTGGTTCATCATAATAAATATAATTGCCCATGTAGATTTCACTCTGGTTCGTTGTCGTTGCAGAGGGACGTACGATTTGTGATTTCACGCCAAAGTTATTTGGTGTGGCACAGAGGAGCTGTCCACGACGCGTGGTGCTGAACTTGACCAGCAGCGGAATGAGCGGCCATAGTGTCGTCATCATGGTGTTAGCAAGTCTCCCTTTGGCTGCGTAGAGCGACTCTGGGTGGATGTTTacatcaaaacaaaacaaactcaACTCTTTTGTAATTGAAAGGCAAGAGTAATCTCAAATGCTGTCCTGGTGTGTTAGGCCCACTGTTTTTTGAGAATCACAGTTGTTTAACCTCATGCC
>TU2428862
GCAAAACATGATCCTAATTCGAATTGGAGACGGAGGTTTCAGGAATAGACAATGGAATTCTTCTTGACCGTTTGATCGCCCTAATTGGCTGTAACACCTTATATGGAAAATAGGTTATATGGAATATTATAGATAGGCTTGCCTATCGAGACCGACGACgcctttttctctctgtccatgattTAGACTCCGGCTCCTCGTGTTCACGGCGGACCTTGATTTAAAGTCATTCAATTAAGGCACGCGGTGAATGCCAAGAGCCGAGCCCATACAGCACCAAATGGACGTGGATAATCCATTATTTTGCGcgatgttgttttgttgttgctgtatTTAATAGCATTGCATCTGTAGCCAAATTAATGTCGTTTGGTTCATCATAATAAATATAATTGCCCATGTAGATTTCACTCTGGTTCGTTGTCGTTGCAGAGGGACGTACGATTTGTGATTTCACGCCAAAGTTATTTGGTGTGGCACAGAGGAGCTGTCCACGACGCGTGGTGCTGAACTTGACCAGCAGCGGAATGAGCGGCCATAGTGTCGTCATCATGGTGTTAGCAAGTCTCCCTTTGGCTGCGTAGAGCGACTCTGGGTGGATGTTTacatcaaaacaaaacaaactcaACTCTTTTGTAATTGAAAGGCAAGAGTAATCTCAAATGCTGTCCTGGTGTGTTAGGCCCACTGTTTTTTGAGAATCACAGTTGTTTAACCTCATGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2428861 False 669 lncRNA 0.41 1 27569649 27570317
TU2428860 False 466 lncRNA 0.44 1 27569852 27570317
TU2428862 True 724 lncRNA 0.44 1 27569852 27570575

Neighbor

gene id symbol gene type direction distance location
LOC110508198 LOC106599164 coding downstream 8089 27518375 ~ 27561560 (-)
LOC110508824 LOC106599165 coding downstream 52282 27512201 ~ 27517367 (-)
LOC110508822 LOC106599166 coding downstream 68013 27477023 ~ 27501636 (-)
LOC110508819 LOC106599582 coding downstream 252900 27303745 ~ 27316749 (-)
tox LOC106599578 coding downstream 326343 27141544 ~ 27243306 (-)
LOC110508825 LOC106599162 coding upstream 21196 27591771 ~ 27595809 (-)
LOC110508831 LOC106599206 coding upstream 262785 27833360 ~ 27837602 (-)
LOC110508834 LOC106599151 coding upstream 338639 27909214 ~ 27924382 (-)
mrpl37 mrpl37 coding upstream 353192 27923767 ~ 27930096 (-)
LOC110508837 LOC106599149 coding upstream 362634 27933209 ~ 27937812 (-)
G2124324 NA non-coding downstream 47 27569399 ~ 27569602 (-)
G2124322 NA non-coding downstream 765 27568615 ~ 27568884 (-)
G2124319 NA non-coding downstream 4224 27565081 ~ 27565425 (-)
G2124290 NA non-coding downstream 60298 27509073 ~ 27509351 (-)
G2124278 NA non-coding downstream 97896 27471521 ~ 27471753 (-)
G2124335 NA non-coding upstream 16123 27586698 ~ 27586921 (-)
G2124352 NA non-coding upstream 46783 27617358 ~ 27645255 (-)
G2124408 NA non-coding upstream 170058 27740633 ~ 27745009 (-)
G2124521 NA non-coding upstream 370542 27941117 ~ 27941947 (-)
G2124520 NA non-coding upstream 372800 27943375 ~ 27944688 (-)
LOC110508791 LOC106568850 other downstream 1500440 25677135 ~ 26069268 (-)
G2122515 NA other downstream 1619196 25946733 ~ 25950453 (-)
G2121457 NA other downstream 2295023 25198248 ~ 25274626 (-)
G2121444 LOC106599515 other downstream 2421129 25144062 ~ 25148520 (-)
G2120836 NA other downstream 2834662 24730674 ~ 24734987 (-)
G2125203 LOC106599130 other upstream 974366 28544941 ~ 28551514 (-)
G2125253 NA other upstream 1056480 28627055 ~ 28685735 (-)
G2125270 agla other upstream 1092133 28662708 ~ 28663426 (-)
G2125290 NA other upstream 1121564 28692139 ~ 28692470 (-)
G2125723 NA other upstream 1314893 28885468 ~ 28885854 (-)

Expression


Co-expression Network