G2125560 (LOC106599070)


Basic Information

Item Value
gene id G2125560
gene name LOC106599070
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29265047 ~ 29269424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2430274
CCCATTttaaatgattttatttatttctgtatagacaggaAAAGGCTAATTAGGCTATATCATTTTGGCCTTATGGACACGCCACCTATAGTCATGCCTAACTCACATGGATCGATGTGTGGCTAATTAAAGACCTGTGATCtggaagggtggggggggggggggggggggggggagaatctaTATTAATCTCTAATATCTGACCATTCACATCAATATTGTTGCGCTTAAATTGATCCATGTGAGCATAAGAGACAAAACTGAATGTTTATTGCAACAAGATGAATGATCTGCAGTAGTAATAGTACAAGAAAATGGCTGTTGCGGTTGCCATAGATCCCAAGCCAGCATCAGGGGCAGGGCGTCTAAGGGGCGTGGTGAGGAGCAATGGGGACATCCAGTCTGAGCTAGCAGTCTTCCTGCCTTCAGCGCAGACCTTCATTAACATCACCTCACAGTCCATTGAGAAACCCACCTCAAACGTGGAGGGGTCTATGGCTCCATCCAGGGGGATGAGACAGGGTTAGGAGCGGTGGTGGGGGAGTGTGTCCATGGGTACATTCATCTTCATCTCGTTCTCCAGGATCTGGACCAGCTGCTGCATGGAGGGCAGGTGACCTGACTCCAGCTTGGACCACACTGGCACATCGTTTAACGTGATTTCAAACGCTCCTGTTGACATACACTGGTTTTCAATCATGTTGctgaagaagaacaccatcatgCAGGCATAAATCTTATTCTCCTGTCCCCAGACCCAGATGCCTGGGGCTTGCATACCGCAGAGGGCAAAAGGGTCCTTGCCGATGATGATCAGTCCGATCAGTGCCAGCTTGAACATGGACAGGAAGGAAGCAACATGTcggtagaggggtagaggaaggTAGTTCTCTCCCTCAATGCGGATGTCTGGGTACCGCTGGTACAAGACCTGCATGTACTCCTCAAACACCCTCTTGTACCCTCAGGAGATgCAGATTTGGAATTTAAGAAGTGGCCCTGTTGCAAATTGCATCTTCATCTTCTTAATGCCGCTGTTATCAGCCGACGCAGCACAATACAAGGAGAGAACTCCTAGAAATATGATCGAAAAAGGTAGCCACCTCTCCGCCATTCTGCTACGATTTCTTCACTACTGCATCAGTCCGGTGCTCCCGTCCCCCACTCTGCTCTGT

Function

NR:

description
selenoprotein T1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2430274 True 1175 lncRNA 0.49 6 29265047 29269424
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508878 LOC106599189 coding upstream 9091 29246463 ~ 29255956 (+)
LOC118944852 NA coding upstream 32334 29228845 ~ 29233301 (+)
LOC110508872 LOC106599074 coding upstream 86150 29176760 ~ 29178897 (+)
LOC110508871 ppm1l coding upstream 93013 29142988 ~ 29172034 (+)
LOC110508870 LOC106599084 coding upstream 159278 29096684 ~ 29105769 (+)
LOC110508880 NA coding downstream 1313 29270737 ~ 29274454 (+)
LOC110508882 LOC106599064 coding downstream 6982 29276406 ~ 29283154 (+)
LOC110508889 LOC106599045 coding downstream 140898 29410322 ~ 29661754 (+)
LOC110508893 marh2 coding downstream 604065 29873489 ~ 29877319 (+)
LOC110508895 LOC106599036 coding downstream 618579 29888003 ~ 29893380 (+)
G2125513 NA non-coding upstream 26627 29233625 ~ 29238420 (+)
G2125548 NA non-coding upstream 98159 29166357 ~ 29166888 (+)
G2125510 NA non-coding upstream 139284 29119231 ~ 29125763 (+)
G2125473 LOC106599198 non-coding upstream 237955 29026786 ~ 29027092 (+)
G2125595 NA non-coding downstream 26168 29295592 ~ 29295808 (+)
G2125596 LOC106599063 non-coding downstream 31009 29300433 ~ 29301842 (+)
G2125615 NA non-coding downstream 54274 29323698 ~ 29324403 (+)
G2125617 NA non-coding downstream 55787 29325211 ~ 29325896 (+)
G2125621 NA non-coding downstream 56885 29326309 ~ 29326657 (+)
LOC110508851 LOC106599130 other upstream 726635 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 1541059 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2155765 27106034 ~ 27109282 (+)
G2123174 NA other upstream 2160777 27101312 ~ 27104270 (+)
G2123101 NA other upstream 2319860 26942200 ~ 26945187 (+)
G2125614 LOC106599059 other downstream 51319 29320743 ~ 29323384 (+)
G2126497 NA other downstream 940823 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 1265427 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 1371263 30640687 ~ 30641243 (+)

Expression

G2125560(LOC106599070) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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G2125560(LOC106599070) Expression in each Bioproject

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G2125560(LOC106599070) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016175 selenot1a coding NC_007113.7 CM002886.2 9684305 ~ 9696283 (-)
grasscarp (Ctenopharyngodon idella) G23315 NA unknown CI01000003 null 1863892 ~ 1866921 (+)
rainbow trout (Oncorhynchus mykiss) G137772 NA non-coding NC_048566.1 CM023220.2 36905465 ~ 36905799 (+)
eurasian perch (Perca fluviatilis) selenot1a selenot,LOC103365166 misc NC_053122.1 CM020919.1 24862996 ~ 24870087 (+)
eurasian perch (Perca fluviatilis) G138684 NA non-coding NC_053124.1 CM020921.1 36184037 ~ 36193304 (+)
mexican tetra (Astyanax mexicanus) G117383 pomgnt1 non-coding NC_035909.1 CM008312.1 41353509 ~ 41359883 (-)