G2125945 (LOC106568934)


Basic Information

Item Value
gene id G2125945
gene name LOC106568934
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29356064 ~ 29378426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2430716
ATGAATGTAGCCTTCCTCCTGTGTtgatctattttctctctcttctttccttgGGGACCTATCACACAGATGTAAATGTTGCCATTAGGAAAATTGCCACTTTGTTGAAGCCCGACAAAGACATCAGTCATGATGGTGACCATGTTGTCATCAAGACCCTCAGTACCTTTAAGAACTACAACATGGATTTCTCTGTTGGCAAGGAGTTTGAGGAGGATCTGTCAGGGGTCGATGACAGAAAATGCATGACAACTATCTCATGGGAGGGGGACAAGCTGGTGTGTGTtcagaagggagagaaggagggccGAGGCTGGACCCATTGGGTGGAGGGAGATAAGCTTTATTTGGAGCTGAGAGTTTGTGGAGTTGTGTGCAAGCAGGCTTTCCAGAAAACCTAAACCAGCACTGGAACAACAGAACGGCGCACCCGGCCTGAGAGGGCAAGACAGACATGAACATGACCCGAGCCTGTGACAGAGAACCCCTATTGTAATCATCTGTCTGCTCATCCATCCATTCTTCCTTATTTCCATCCATCCTTTTACATTTAATTCCATCAAGACTGTTACATTGCCCCACTCAAACTATCCACAACAGGGGAGATGTAACAAAAAGGAAAACAACTGTTCATCACTGTACTGTAACTCTGTGCTCAATTGATGAACatgttatatgtgtgtgtacgCATTTGCACTGCAGTAGGTGTGGTAGGCTTTGTGATTAGTGCCTCAGTCTCTGATGATGCACCGGACTGATAACTGGTGGTAAGCTTGACCACTACCGAGGAAGTTTACAGTGTAAAGTCAACTCATATTTGGGCCATGAGAGAAGCAGTGAAATGAATTCAAACACACAAACTTTGGATGCTACATTTTAGGATACATAAAGAAATGAAAAATCTGTATAGAAAAGAGTGAagtaaatagtacaaataaatgtaaGAAGATGCAGTGATCACGTAACCAGGAAAACTGGATATGAAAAAGACAAGTGGATTATTCGTTGGATTCATGAAATTGAATgtaaaaaaattaattaaaaaaatacacaGT

Function

NR:

description
retinol-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2430716 True 1055 lncRNA 0.42 3 29356064 29378426

Neighbor

gene id symbol gene type direction distance location
copb2 LOC106599054 coding downstream 9695 29331101 ~ 29346369 (-)
LOC110508885 LOC106599059 coding downstream 25519 29320737 ~ 29330605 (-)
LOC110508883 LOC106599063 coding downstream 40891 29300650 ~ 29315173 (-)
LOC110508881 ap2m1 coding downstream 62639 29283916 ~ 29293425 (-)
LOC110508879 LOC106599070 coding downstream 86541 29264829 ~ 29269523 (-)
nmnat3 nmnat3 coding upstream 6446 29384872 ~ 29393924 (-)
LOC110508890 LOC105021148 coding upstream 304179 29682605 ~ 29806734 (-)
slc25a36a LOC106568938 coding upstream 443455 29821881 ~ 29872184 (-)
LOC110508894 LOC106599038 coding upstream 498323 29876749 ~ 29883535 (-)
LOC110508897 LOC106599029 coding upstream 550576 29929002 ~ 29960541 (-)
G2125943 NA non-coding downstream 5662 29350021 ~ 29350402 (-)
G2125937 NA non-coding downstream 39685 29316154 ~ 29316379 (-)
G2125887 NA non-coding downstream 56888 29298519 ~ 29299176 (-)
G2125888 NA non-coding downstream 57786 29297806 ~ 29298278 (-)
G2125948 NA non-coding upstream 4909 29383335 ~ 29383852 (-)
G2126651 NA non-coding upstream 46223 29424649 ~ 29427466 (-)
G2126654 NA non-coding upstream 53056 29431482 ~ 29432039 (-)
G2126690 NA non-coding upstream 101918 29480344 ~ 29480852 (-)
G2126744 NA non-coding upstream 183153 29561579 ~ 29591924 (-)
LOC118944842 NA other downstream 232322 29118684 ~ 29123806 (-)
G2125813 NA other downstream 277320 29078039 ~ 29078744 (-)
G2125723 NA other downstream 470210 28885468 ~ 28885854 (-)
G2125290 NA other downstream 663594 28692139 ~ 28692470 (-)
G2125270 agla other downstream 692638 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 1022787 30399711 ~ 30401807 (-)
G2127177 NA other upstream 1056009 30434435 ~ 30434854 (-)
G2127455 NA other upstream 1175163 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 1326659 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1865665 31244091 ~ 31244692 (-)

Expression


Co-expression Network