G2126894


Basic Information

Item Value
gene id G2126894
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29977789 ~ 29979415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2431812
actttcgcaaggcactgtatgaatgaGAATAGGCAGAGCAATGGATGTATCCATCCGGttaggctggtgggaggagctataggaggacaggctcattttaatggttggaatggaatcaattgaatggtatcaaacacagcAAACACTTGGAAACAGCGTGTTTGActcgttccattgattccattccagccactacaatgagcccatcctcctatggctcctcacaccagcctcctctggtatacACGTATATTATATCAATGGCTCTGGGTATTGTTATTTGACTGTATTTCACAAAGaaactttttttaaattgtatttaatctttatttaacaaggaaagtcagttaagaacaaattattatttacaatgacagcctaccaaatgacctcctgcggggatgggattacaaataaaatataggacaaaacacacatcacgacaagagagacaacgcAACATAAAGAGAGGCCTAAAACAACATAGCATAGCAGCAACACAAGACGACACACTGTAATGGTCCAATAAATGATGCTGTAGATGCGAGAACCATTGTCTACGTTTTAAActcataaaagacacaccctaGTCCACTATCCTCACTTTATGCAATGCCCTTGGAGTAATCCCTGCGGCCATCTTGGTCGTCGGTCGACCAAAGCAAGGGAAGTTCGCAACGTAAAtccctcagccctcgtttttgaTAAGATTTTGCGAGTGTACACTTATGTTCACTTCGGGGCTTGAAACGCCCCATAATTAAATTCGCGTCACGTAAaagtaattatgtttttgtttggatAGCTTTTTGGAAATtgcataaataaaacatgttccttcttcagaagttccagctaggcaggctaacgttagctagcaaattaattagctaactatcATACAGTAAGCGTATATTAATAActatatagttaatataagtagacatgcaatcataattgactgtagcccatataaagcacccacaagctaccggtggctAAAAACACAATATTCGCCGGACGAACGAGTGACGAATTTCCGGGCAAGGGCAGTCCATTTAAAATGTCTTCCTCCCTTGCCCTACAAGTGTAAACTCGTCAGACGTCATTGTACGTCATCAGAAGTttgaggggagagggtgtgtcttttaagtgtttggaatgcagccatCTTTGGATATTCAGTGCTTTTAAGCCACATCGTCCTGACAGCTGTATGACTGACTGCCTGCTTCTTTCTCACTATTTTAAATAGTTCCCTTTTTAGTTCCTTATTCCCCTCACAAATCACTCTCGCTTTGACATAATGGTCAACGTAGCGTGCCATTTCTTTTACAATCTCTAGCCCCCCTCATCATGTGTTTaatatttgttgtgaaattgtacAATATCAGTATATTGTATAGTGTACAATATAAGGAcacacaaatgtttttttttattaatgtACTTCAACCATTTGTTATTATCTCAGGTAATTTATTGCATATACAATCAATATTTGTAATGTGATGAATAATGATATGGACATTTTTATTTTGTCTTTGGTATCTGTATTCTCTACTTCAGAATATGGTCTAATGCTGTGATTAAACCACTTAAAGAAAAATTTAAGCCAATAAGCTTA
>TU2431813
aatgagcccatcctcctatggctcctcacaccagcctcctctggtatacACGTATATTATATCAATGGCTCTGGGTATTGTTATTTGACTGTATTTCACAAAGaaactttttttaaattgtatttaatctttatttaacaaggaaagtcagttaagaacaaattattatttacaatgacagcctaccaaatgacctcctgcggggatgggattacaaataaaatataggacaaaacacacatcacgacaagagagacaacgcAACATAAAGAGAGGCCTAAAACAACATAGCATAGCAGCAACACAAGACGACACACTGTAATGGTCCAATAAATGATGCTGTAGATGCGAGAACCATTGTCTACGTTTTAAActcataaaagacacaccctaGTCCACTATCCTCACTTTATGCAATGCCCTTGGAGTAATCCCTGCGGCCATCTTGGTCGTCGGTCGACCAAAGCAAGGGAAGTTCGCAACGTAAAtccctcagccctcgtttttgaTAAGATTTTGCGAGTGTACACTTATGTTCACTTCGGGGCTTGAAACGCCCCATAATTAAATTCGCGTCACGTAAaagtaattatgtttttgtttggatAGCTTTTTGGAAATtgcataaataaaacatgttccttcttcagaagttccagctaggcaggctaacgttagctagcaaattaattagctaactatcATACAGTAAGCGTATATTAATAActatatagttaatataagtagacatgcaatcataattgactgtagcccatataaagcacccacaagctaccggtggctAAAAACACAATATTCGCCGGACGAACGAGTGACGAATTTCCGGGCAAGGGCAGTCCATTTAAAATGTCTTCCTCCCTTGCCCTACAAGTGTAAACTCGTCAGACGTCATTGTACGTCATCAGAAGTttgaggggagagggtgtgtcttttaagtgtttggaatgcagccatCTTTGGATATTCAGTGCTTTTAAGCCACATCGTCCTGACAGCTGTATGACTGACTGCCTGCTTCTTTCTCACTATTTTAAATAGTTCCCTTTTTAGTTCCTTATTCCCCTCACAAATCACTCTCGCTTTGACATAATGGTCAACGTAGCGTGCCATTTCTTTTACAATCTCTAGCCCCCCTCATCATGTGTTTaatatttgttgtgaaattgtacAATATCAGTATATTGTATAGTGTACAATATAAGGAcacacaaatgtttttttttattaatgtACTTCAACCATTTGTTATTATCTCAGGTAATTTATTGCATATACAATCAATATTTGTAATGTGATGAATAATGATATGGACATTTTTATTTTGTCTTTGGTATCTGTATTCTCTACTTCAGAATATGGTCTAATGCTGTGATTAAACCACTTAAAGAAAAATTTAAGCCAATAAGCTTA
>TU2431814
actttcgcaaggcactgtatgaatgaGAATAGGCAGAGCAATGGATGTATCCATCCGGttaggctggtgggaggagctataggaggacaggctcattttaatggttggaatggaatcaattgaatggtatcaaacacagcAAACACTTGGAAACAGCGTGTTTGActcgttccattgattccattccagccactacaatgagcccatcctcctatggctcctcacaccagcctcctctggtatacACGTATATTATATCAATGGCTCTGGGTATTGTTATTTGACTGTATTTCACAAAGaaactttttttaaattgtatttaatctttatttaacaaggaaagtcagttaagaacaaattattatttacaatgacagcctaccaaatgacctcctgcggggatgggattacaaataaaatataggacaaaacacacatcacgacaagagagacaacgcAACATAAAGAGAGGCCTAAAACAACATAGCATAGCAGCAACACAAGACGACACACTGTAATGGTCCAATAAATGATGCTGTAGATGCGAGAACCATTGTCTACGTTTTAAActcataaaagacacaccctaGTCCACTATCCTCACTTTATGCAATGCCCTTGGAGTAATCCCTGCGGCCATCTTGGTCGTCGGTCGACCAAAGCAAGGGAAGTTCGCAACGTAAAtccctcagccctcgtttttgaTAAGATTTTGCGAGTGTACACTTATGTTCACTTCGGGGCTTGAAACGCCCCATAATTAAATTCGCGTCACGTAAaagtaattatgtttttgtttggatAGCTTTTTGGAAATtgcataaataaaacatgttccttcttcagaagttccagctaggcaggctaacgttagctagcaaattaattagctaactatcATACAGTAAGCGTATATTAATAActatatagttaatataagtagacatgcaatcataattgactgtagcccatataaagcacccacaagctaccggtggctAAAAACACAATATTCGCCGGACGAACGAGTGACGAATTTCCGGGCAAGGGCAGTCCATTTAAAATGTCTTCCTCCCTTGCCCTACAAGTGTAAACTCGTCAGACGTCATTGTACGTCATCAGAAGTttgaggggagagggtgtgtcttttaagtgtttggaatgcagccatCTTTGGATATTCAGTGCTTTTAAGCCACATCGTCCTGACAGCTGTATGACTGACTGCCTGCTTCTTTCTCACTATTTTAAATAGTTCCCTTTTTAGTTCCTTATTCCCCTCACAAATCACTCTCGCTTTGACATAATGGTCAACGTAGCGTGCCATTTCTTTTACAATCTCTAGCCCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2431812 False 1627 lncRNA 0.38 1 29977789 29979415
TU2431813 False 1431 lncRNA 0.37 1 29977789 29979219
TU2431814 True 1351 lncRNA 0.41 1 29978065 29979415

Neighbor

gene id symbol gene type direction distance location
LOC110508900 LOC106599024 coding downstream 451 29967565 ~ 29977338 (-)
LOC110508897 LOC106599029 coding downstream 17248 29929002 ~ 29960541 (-)
LOC110508894 LOC106599038 coding downstream 94254 29876749 ~ 29883535 (-)
slc25a36a LOC106568938 coding downstream 105605 29821881 ~ 29872184 (-)
LOC110508890 LOC105021148 coding downstream 171055 29682605 ~ 29806734 (-)
LOC110508901 LOC106599023 coding upstream 1688 29981103 ~ 29984528 (-)
LOC110508903 LOC106599022 coding upstream 12178 29991593 ~ 29998944 (-)
LOC110508904 LOC106599012 coding upstream 20039 29999454 ~ 30032487 (-)
LOC110508906 LOC106568950 coding upstream 121226 30100641 ~ 30114984 (-)
LOC110508907 LOC106599005 coding upstream 164620 30144035 ~ 30187260 (-)
G2126937 NA non-coding downstream 73948 29903521 ~ 29903841 (-)
G2126935 NA non-coding downstream 77395 29900128 ~ 29900394 (-)
G2126918 NA non-coding downstream 141450 29835008 ~ 29836339 (-)
G2126846 NA non-coding downstream 276919 29700531 ~ 29700870 (-)
G2126961 NA non-coding upstream 6478 29985893 ~ 29986103 (-)
G2126963 LOC106572245 non-coding upstream 7921 29987336 ~ 29987603 (-)
G2126964 NA non-coding upstream 8391 29987806 ~ 29988218 (-)
G2126966 NA non-coding upstream 10088 29989503 ~ 29991551 (-)
LOC118944842 NA other downstream 854047 29118684 ~ 29123806 (-)
G2125813 NA other downstream 899045 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1091935 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1285319 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1314363 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 421798 30399711 ~ 30401807 (-)
G2127177 NA other upstream 455020 30434435 ~ 30434854 (-)
G2127455 NA other upstream 574174 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 725670 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1264676 31244091 ~ 31244692 (-)

Expression


Co-expression Network