G2126323 (LOC106599023)


Basic Information

Item Value
gene id G2126323
gene name LOC106599023
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29981032 ~ 29982292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2431132
CTCTAGTTCAGGCGGAGTGCTGATAGCCCTCTCTTTAGCTACTGCTTAGTGGGGTATCAGTTGTATCTGTCCTTAAAGTTAGAATCCTTAGAtgctacatcaatttttggaCTTGTGCTATATAACCATTGATTCTTGACGAATATAACGTatgaatgcctcatgagcttagttcaaatttcataccccatcagaacccataATATAAGCTTGTtgtactccaatgtttgtaagcaaactaaatgtaaacaaacactgtatagcctcaaaacatggttaaaactatcattttgaaatcatggatggtcagtccgtgaatatagctctgtctatgaatttgagagtggttacatttcttcaggcccatccctcaggtttttaccaaaacagaggcagggtcaccactttgttattgtttcaattaaggattccagctttaagtgCTTTCTGTCCATTGGGGACAGGAGCAGTGAGTTGAGGACAGAGGTCACCGGAAGTCATTATTTAGTGAGCATGCTGATGGTGCTGGTGGCTGCAGTGGTGGTGGTCATGGTCATCCTCCTCAGATTGACCCACAAGCTCCAGCATCTCCCCCACTACGGCCTGCAAGGCTCTGCCTAGGTCCTGGGCACTGTAGGGCTTCTCTAGTGGAGGAACGTGCACAAACGCTGACCTGCCCTTCCCCAGGTACAGCGACATGTAGTAGGTGTAGTCACACAGGTATCGGCCTGCATCCTTTGATACTGACACTGCCACGCCAAGCCTTGAGGAGTTGACCCTCTTGCAGACTAGGTCCATGTCTATGACTGAATCGATGCAGTCAGGACCACCGTCCATGCAACACTGAGAGTCTGGACAGAAGCTGCAGTTGTCCACCCGCTTGTAGCCGTGGTTGTGGCCACATTTCTCCAGGGTGACTGTGGTGGCTATCCCAGAGACCCCGACATG

Function

NR:

description
pyroglutamyl-peptidase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2431132 True 948 lncRNA 0.47 2 29981032 29982292

Neighbor

gene id symbol gene type direction distance location
LOC110508899 LOC100136537 coding upstream 53479 29924226 ~ 29927553 (+)
LOC118944851 NA coding upstream 59826 29914830 ~ 29921206 (+)
LOC110508896 NA coding upstream 75006 29904340 ~ 29906026 (+)
LOC110508895 LOC106599036 coding upstream 87652 29888003 ~ 29893380 (+)
LOC110508893 marh2 coding upstream 103713 29873489 ~ 29877319 (+)
LOC110508902 LOC106599020 coding downstream 6348 29988640 ~ 29991589 (+)
LOC110508214 LOC106569003 coding downstream 281858 30264150 ~ 30265990 (+)
LOC110508911 LOC106598992 coding downstream 301628 30283920 ~ 30336939 (+)
LOC110508216 NA coding downstream 305962 30288254 ~ 30299223 (+)
LOC110508913 LOC106598990 coding downstream 365116 30347408 ~ 30353668 (+)
G2126322 NA non-coding upstream 1606 29977894 ~ 29979426 (+)
G2126339 NA non-coding upstream 24846 29955251 ~ 29956186 (+)
G2126300 NA non-coding upstream 80712 29900077 ~ 29900320 (+)
G2126297 NA non-coding upstream 94668 29886065 ~ 29886364 (+)
G2126288 NA non-coding upstream 114712 29866105 ~ 29866320 (+)
G2126320 NA non-coding downstream 2467 29984759 ~ 29985703 (+)
G2126318 NA non-coding downstream 3584 29985876 ~ 29986384 (+)
G2126354 LOC106599012 non-coding downstream 23633 30005925 ~ 30007953 (+)
G2126355 LOC106599012 non-coding downstream 26521 30008813 ~ 30009098 (+)
G2126358 NA non-coding downstream 32430 30014722 ~ 30014923 (+)
G2125614 LOC106599059 other upstream 657648 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 706581 29270737 ~ 29274454 (+)
LOC110508851 LOC106599130 other upstream 1442620 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2257044 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2871750 27106034 ~ 27109282 (+)
G2126497 NA other downstream 227955 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 552559 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 658395 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1658010 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1757020 31739312 ~ 31740070 (+)

Expression


Co-expression Network