G2127031


Basic Information

Item Value
gene id G2127031
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30137109 ~ 30143209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2431967
AGTGGAAttcaaatggaattgaccccaactctgCTTCCAGTGCTTTCTTTTATACTGTAGCCTGTAGCCATGATTGACTATGGTATTACTGTTAGTATTCTTGGTGTTTTTATTTCTACTTGAATATACTCACAGAGCATCAATCTATTGGATCTTAACTCTCGGTGCTGTATGGCCTAGTCTCTAGGAAGCCTGTCTAGTACAATGTTCTTCTCACAAGCGTTTGCTTTTGTCACAGCGTTACTACTACTCGCAGTACTTCCTCTTTGAGCTTGACTGTTGTTTTAATTTGACACAAGCTTGATTCACAGAGCTGTAGAACATTGTTGTACATAAGAAAAACCCCAGATTAACGTTATATGACCCATATATCTACAGACAGTAACAGGCAGTGTGACTGTCAGTCTAAAAGCTGTATTTGCTGTACGTAACCATGCAAACAGAAAGTATTGAATGCTTTCCTTTCCAACTGTGTCCCCGCTGCAGGGGAAACTGCTGGAGGATGCACAGTATCCAGCTAAACTTGAGCCAAATGAAGGATGTATTTCATGTAGCAAATAAAATATCTGATCCGTTTTGAGCATGACCACGGAGGTTCGAGAGATTTTCTATAAGTACAGAATGCATGTAAATCCTTCTTTTGGATAGTACCTAGACACTAGCCCTAATACTCGTGCTGTTTTAAGTGTGTACGTCTCATGTCGTAGACCAGTAtaatgcacaaacaatagtaagtGAATAAGAATACATGGAGATTTACAGACACACTCGCTGTCGGGTGAATCCCTCCACGGGTACTGAGCAGTACTTTTGTTGTGTGGCTTCAGGGACTTACTCTGCCAATGCTTCTATTCCTTTTCCATAGCATAGACTTTGTTTGTGCGAATACACTTCAGCCAAAATTTGAAGGTTGATTCTTGACTTAAAGTGAAAATCCACCCAAACTATCTCtggtatatattttttcattagtccacttgatacagtcccaaaacatTTTAGGACTGTATCAACAGAAAAATCTAAACAATTGAATTGAATGGATTTTCCCTTTTAAAGAAACATCATGTAATGAAACTGAGGATATCGAGGATTTAAGTTTGGTGACTGTTAAGTGCTGCGTTTAGATTTGTTGAGAACATTTGTAGAATGATGGCCACTCCTTTTTGGGCAGTTCTAAACATGATCATTTGCTCAAAGTGTGATTTATTCTCGCTCTTTTGGTAATACAGATTAAGTATGATGCGTAAATATTGCAATTGAACAGTCATTCAAGTGGATTGGTTAATTAGTTATGGGAAATTAGATGGTACAAATGTTGGTTGGAGACAAAAATGATGTTAAGGATAAATACATTGGTACTGTTTAATGGTGCTTTTCACAGTTCTTGGCCAGAAGACTAGACAAGAATTAAACTCAAAGTGACATTAGTTGGGTGTCTTGAGAGGGATATAAAAGAGTGTGAATCACAAAGTTAAGAAGTGCCTTCTCTGTCTGCGTTACTTAGCTCTTGTCTTTATGTCAGAAGAGCTTCTCTCCTGTAGACAGAGccacagtgtactgtagtctTTGTTTAAAAAGCATTTGCCAATGTCATAGCCTGACGACCCGCACTAAATTCTTCCACTTCTCTGTTGTTCACTACATACTTTAGTCCGAGACTACCATCATTGAAGTCATTTGTGGTGAGGGGAGTTGTGCAAAATAAAGTAATCAGCGATTAGATTGTCTCTAACCAATTAGTGTCAAAGCCAATGACAAATTTTCAAACCGCCGCTTTACCCacgtgttctggctctggcccaacccatcggtttctggaccaatcaggtGGCCCTGAATATATTTGCATTCGGTGACGGGTCGGGGAGGTATTGCGTAAGAAACTAATGTCCGGGGGTGTGGCATACCGTTTGGCTGGAGCAAGGAGTCTGAGTAGCCAGGCAACTAATGTCAACCCCTGAAGAGAACTGACAAATGAGCATAGTTATCATCTttcctttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcaagtTATGGAGGTTGTTTGTTTAGTTATGCTTCTCTTTTGTTCTTTTTTTGTGACTGGGGCTATTGCTTGGTGCTCTTCAGTGAGCGAGGCAGTTTCCTTTGGGGTTTGTTGTATATTGGATCAAACCTAGAGTGGATAGAAATGTGAATACACAGTCGTAGCCCAACACCGCGTTTTGTTTAATAAGCCGAATCTCATTCGATAAGCACTCAATTGAATGCATGCAGTATTTCTGTGTTTTCACATCAATACCCTGTGAATTCAGAGCCAGTTTACCCAGCTACTGACGTATTTATTTACAGTCCGTTGGACCATCATTTTGTCAATGTGCTCTTTCCTTTTCCACACTCCTTAATTGAGTGTGTCTAGGTCTACAAAGTATGAATGAATCCTAAACCGTGTCAGTGAAGCTCAGTAAGCCATCATAGTGTTTTTTTATTAAGTGTCTCATGTCGGGGATGTTTTATCTGACTTTCTTTGTGAATCAAAGTGAAAAAAAATGTTGTTGTCCCCTTACACAATACATAGGGTGGAGGCATGACAAACTTTGAAATAGTAGCCTGTATTCTGAACCTGTTTTGAAATTGACATTGAGGCAAGAGGGACTAATGTCCATTAttgctgtttttcatgattcaaTTGTTTAACTGTATATACTATAAAACTGTGTTCCGTGTCTGAAAGGGAAGCTAGCTAATATGCAATCGGTATAATTGGTCGGTCCTCAGCTCTTTAATGCTATATGAATGTCATGGAGTCACATTAACGTCACTTGCATTAACATTAATGTTAACATTTGTGCAGTGATCGTGTTTCGGTGGTCGTGCCCAATGAGATTGGATTGCGGAAGAGGGATGAGGGTGAGTTGACCATTGTTGTGCTTTGACTTGGAGCAGAAGTTGCTTTGAATTGTCCTTTACCCTGTTATTGTGAAACAGCATGTGTCCAAGCACCCTCCAAAATGATCAGATGAATTACCCATTATTGCTTATCTCTGGTACAAAATACTTGTAATAAGGTATCATACTTCTACCATATCATTTACTGAATACAAGTAATTAACATTTATTACGTTTGATGAATATTTAGGTTTGAATCATATTTGGaaaaaatatattgaaatatATCTTGACATATTGTTTTTGGGTTATATATTCTGATTTAATTATGCTGGAAACGGATCAGAAACAGAAGCTAACTTAATCAGAGCTTAGATGGTAACACGTCTATTGACGTGCCACAGCAGCATTTCATCAGTGGGCCAAGTGATATCTAGTTTCCAGAAACTGAGCTTTATCATAATCAAAAGCAAGCTTTCCTTCTTTTTTGATTGTGGTTCTATTGATTTTAATTGACCCACAATAATTATAATGAAGAGGAGGCAGGCTCATCTATGTTTAAAATGCAGCTCTCAATCTAGTTGTCCATGATGATATCATACTGATTGGTCAACCTTGGCCCCATTTAACCAACTCACACATATGTGTTTGTATCAAGTCTGAGTCGAGATTATCAGTAGCCTTGACACCAGTGTCTTTCAGCAAAGCTCCATTGTTACTATCCTACCACGGGTGGTGACAACAGAGCTGACCAACACTGGGACTAGCTGCTATCTAGACTACAGCCTGTGTATTTTTAAGATGATAAGATAGTTTTTCTGAGCAGAAAATAGTTTCCTATACAGATCTGCTTTGTCCATAGAATGGGGAAAGCACCTttattattttcatttatttcagATCATGGTggcaattattttttattttgacatGAACATGTATTCTCAGTTTGAGATTCTGGTTGTGTTTTTTATTTAGCAAAAGGAGGCCGTTTGAAAGTTTCACCAGGGGAGTGTTTGAGGTGGTATGAAAATAATGTATAATTCGAAGAGCGGGGCATTTATTAATCATTGGATAAAGTCCCCCCAAATGCACTAGAAAACACATACTTTATACCATCCAAACATGTTGCCAACAACAATAGTTAAGGTACAAATGTAAATGGATCAGAAACACTCCTTCGGAGAATAACAGACCTTTGTACATGGAACAATGATGGCATTAGAAAGTGTTCCTTTAAGGTGCCTGAGTAGGGTTTGTTTTTAATTAGGCTTTTAAGCTAATTGATTTGTCTGTCCAAgtgtttgttttggtttgttttgtttgtttttgtttgttaatgATAACCGTACAGAATCTATCAAATAAGCTAGCTTGAATATTTTCCTCCATACAGAAAAGTACAAATGTTTACGATATCTAATTAACCAAATAGCAAGTATGCGTTTGAGAATCAATCAGTCTGTCACTAAAAATGACTGATcgattgatttgatttatttctttCCTCTGTCATTTTAAACTTGAAGATGTTATGACTGCTTATTCTTTTGTTTAGATGTAGTTGTTTTTTACTTGTCAAACAGTGCTCCCTCAATATGACAAGAGAAGAATTGTTACCATCGTCTGCTTAGAACAAAATCGacatatttttcttttttttttaaaggcacccAGGGCAGAATGGTCCCTGGGTGGCTTAGAATCATTAAGGAGATGCTGAACAGGCCGATTGGCATGTGTTTTTCTGTTTCTCATGACAAAAAGTCGATTtcagtcttggaggtgtgtttcctGACCGATTCCTCATTTGGTTAATAATGTTTGTCCCCCATTAGACACTGGAAGCCTATTTCCCCTCCTCAAAATCCCAGAATGAATCTAGGATAagaagaaatctgtcattcatttagACTTTTTGGCCGAGGATGTTTTAGTTGCTAAATTAGAAATCTgactaaggtgtttggtgcagtatttctcaagtttaAAAAATCAGAGACGCATTGTCTTACGTTAACAAAGTCTGAGCTGCTGAGCACGTCTGCCTTACTGTCTATGCTATTGGATAGAGAGAAATTACCGCAGCTATTCATCCCATGTTAGTGGGTAAATGGACACCGTCGAATCAAAACCCAACATTAATTTACCTGTTGTGACACACGGATGTTCCAAACTCCATTTTAGACCAGACTGACCCTGTGAcaaaaatgatcctatttacactttgttgTAAATTTTGACattagaataaatgtttctgacacaTATCGATGACGCAAATCCTAACTTTAGACAATCTTAATTTAGCGTTTTTGCACATcgtgcattgatgtcaatgggcgattaaaaaaattattataataatacattCATTTTTTGGAGTTAGTCGCAAATCTCAAGTTAGGTTTTGGCTGTAGATTACACCATAGATGATTTGGGAGGCTTTAGTTTTCAGACTGCTTttcaagagtgagagagaggtttaGCCAACTAGTACATTTTAATTTGGAAATTGGAAATGAGAAGAGGCATGGGTTTCGATTTTGCACTAAGAGGTCATCCTCGTCTCACTAAGATGGAGAAATGCAGTACATTCGTTGACTTGCTCTCTGTCATTCAAAACAGACTCAATTAAAAATGATGCTTTCATTTACTTCTGTTATCTAATCTCTGCAACCCTTCAATGTAGATTTCATCCTAGGTGGTGTTTATGATCATGTGACAGTTGTAGAATGCACGTCCGGTACAGTACATTTTGACAAGCCTTTATTTGCTTTGGAGAAATCAAAGTACAGTGTGATAATATGATTCTTATTGTAGCGAAATTTGGCGTCATGTTTTCCCCTTTTTTCAAAACAGTAAAATGGACATGAACCAGACTGTCTGATAAAGCTACTCTACACCAAAGTGCAATTGAACTCAGAGGGAGCACTGTTGGTGAACCAGTGGGAGTCTTCTCTCCTGGTTGTGGTGTGCACAATCTTTATGTATGGAAGATTATTCTTCTTCTCATCTTTTTCCAGTCTGTCTTAGATAATTCAGAtgcaacattttttattttgttttctgtgtacagCTTGCTTCGGAGTTGTCTCAAACAGGTACTCTTACTTCTGTACGGTTCTTTCCTTAGGATGATGCaatgattttaaaaaataataataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2431967 True 6055 lncRNA 0.38 2 30137109 30143209

Neighbor

gene id symbol gene type direction distance location
LOC110508906 LOC106568950 coding downstream 22125 30100641 ~ 30114984 (-)
LOC110508904 LOC106599012 coding downstream 104622 29999454 ~ 30032487 (-)
LOC110508903 LOC106599022 coding downstream 138165 29991593 ~ 29998944 (-)
LOC110508901 LOC106599023 coding downstream 152581 29981103 ~ 29984528 (-)
LOC110508900 LOC106599024 coding downstream 159771 29967565 ~ 29977338 (-)
LOC110508907 LOC106599005 coding upstream 826 30144035 ~ 30187260 (-)
mast3a LOC106599001 coding upstream 45676 30188885 ~ 30253370 (-)
LOC110508910 NA coding upstream 130684 30273893 ~ 30279240 (-)
LOC110508912 NA coding upstream 157878 30301087 ~ 30304412 (-)
LOC110508917 LOC106598978 coding upstream 256502 30399711 ~ 30401807 (-)
G2127025 NA non-coding downstream 10249 30126616 ~ 30126860 (-)
G2126989 NA non-coding downstream 87416 30047809 ~ 30049693 (-)
G2126966 NA non-coding downstream 145558 29989503 ~ 29991551 (-)
G2126964 NA non-coding downstream 148891 29987806 ~ 29988218 (-)
G2127056 NA non-coding upstream 51921 30195130 ~ 30223590 (-)
G2127102 NA non-coding upstream 161214 30304423 ~ 30304655 (-)
G2127106 NA non-coding upstream 167995 30311204 ~ 30311541 (-)
G2127108 NA non-coding upstream 168931 30312140 ~ 30312388 (-)
G2127109 NA non-coding upstream 170268 30313477 ~ 30313708 (-)
LOC118944842 NA other downstream 1013367 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1058365 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1251255 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1444639 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1473683 28662708 ~ 28663426 (-)
G2127177 NA other upstream 291226 30434435 ~ 30434854 (-)
G2127455 NA other upstream 410380 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 561876 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1100882 31244091 ~ 31244692 (-)

Expression


Co-expression Network