G2127477 (ocel1)


Basic Information

Item Value
gene id G2127477
gene name ocel1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30602522 ~ 30603707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2432464
CGAAGAACTCCATCTCCCTGCGGGTGGCCTCATGCCTCCACATTTTCAGACACACCAGGAAGCTGATGAGGTACATCAGCATGTTGATGAAGATGAAAGCCGTGCCAGCCATCTGTCCTCCGTCAACCCGACACAGGCTGGACATTATGGGGTTAATGCCAATGGTCATGTAACACAACCCCCCACGTTTGAGGTCATTCAGGTACACGATACCAGCCGCCATgtagaggaggaacagggcgACGTTGATGATGCCTTCTGTGAGCGGCCACCAGGGTGAGTCCAGGAGAATGGTACGGTAGTACATGGTCAGCCCTATCACCAGTAGGAGGATGGTTACAATCCACGTCACCCCAACCACCGCCATCACGAATGGAGTCATGGGTCCATTATAGGAGTTCCCCGACGTGCCATGACTATTGTTATACAGTCCATAGGCGTTCGACCACTCACTGTCCTTATAGATGTAGGCACAGACACAGGCAAGGACCATACCCCCAAAGAGAAGTTCAAAACCAGCCAGGAGTCTTAGTAACCCAGGCCAGGATTTCATATAGGAGTACTTAAGTTTGTAGACTTCCACCTTCTCCGCATAGTACTCAGCTGGATGGATACTGGTCAACTCTGATTCCTCTGGAAGATAATGTAGTTGGTCATTGTCTATGGGACTGTCCCTCAACAAGGGCCTACGGGAACTCTTGCTGGAGGTCCCCAATGAGTCCTGAGTGTCCCAGTACCTCCTCTCTATTATTGGGCTGACAGGTGGACTCACCCTGGACCCATTGGGCACAATCTTGACCCCATTGAAGCTCAGATCAGAGTCTGCATCACCTTTCCCCAATTTGTGGAGAATACTGCCCCATGATTGGATGAGGAGGGTTCTCAACCTGCCCTTTAGGGTCCCCTCGTCCTCACCATCACCCTCTCCTTGTACATGTGGAGGAGTGATGGATGAGTGGGCAGTGGAGTTTGCATCATGTGAAAGGTTATCCTCAAAGTTTCTCTGAGGTAGCTCTGCTGGGCCATTGTTCGAGGAGATCCTCTTCGAAGAGGAGTTCCCATCCACACTCTCAGGGTCTCCGCTCTTGAATATCTTACTCCAGTTTTTCATGCTATGGGCTGATATACAGTCAGTGGGCTTATTTAATCATTGATGAAAGATGAAGTTAATTTTCTTGTCGTAGAG

Function

symbol description
ocel1 Predicted to be integral component of membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2432464 True 1186 lncRNA 0.50 1 30602522 30603707

Neighbor

gene id symbol gene type direction distance location
LOC110508919 NA coding downstream 155074 30442013 ~ 30447448 (-)
angptl4 angl4 coding downstream 185878 30409271 ~ 30416644 (-)
LOC110508917 LOC106598978 coding downstream 200984 30399711 ~ 30401807 (-)
LOC110508912 NA coding downstream 298110 30301087 ~ 30304412 (-)
LOC110508910 NA coding downstream 323282 30273893 ~ 30279240 (-)
LOC110508217 LOC106598972 coding upstream 26235 30629942 ~ 30649835 (-)
LOC110508927 LOC106598960 coding upstream 96835 30700542 ~ 30704777 (-)
LOC110508928 mrpl34 coding upstream 101378 30705085 ~ 30706591 (-)
ptger4c LOC106599187 coding upstream 302172 30905879 ~ 30907975 (-)
LOC110508937 NA coding upstream 375012 30978719 ~ 30980452 (-)
G2127473 NA non-coding downstream 10158 30588988 ~ 30592364 (-)
G2127470 NA non-coding downstream 19260 30581005 ~ 30583262 (-)
G2127226 NA non-coding downstream 91359 30510730 ~ 30511163 (-)
G2127222 NA non-coding downstream 92593 30509693 ~ 30509929 (-)
G2127220 NA non-coding downstream 99524 30502742 ~ 30502998 (-)
G2127485 NA non-coding upstream 11503 30615210 ~ 30615523 (-)
G2127491 NA non-coding upstream 23941 30627648 ~ 30628703 (-)
G2127494 NA non-coding upstream 29007 30632714 ~ 30632930 (-)
G2127497 NA non-coding upstream 37924 30641631 ~ 30642015 (-)
G2127455 NA other downstream 47335 30553589 ~ 30555187 (-)
G2127177 NA other downstream 167668 30434435 ~ 30434854 (-)
LOC118944842 NA other downstream 1478780 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1523778 29078039 ~ 29078744 (-)
G2128216 NA other upstream 640384 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 715576 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 1107901 31708667 ~ 31761665 (-)
G2128568 NA other upstream 1279008 31882715 ~ 31883140 (-)

Expression


Co-expression Network