G2127503 (LOC106598970)


Basic Information

Item Value
gene id G2127503
gene name LOC106598970
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30658507 ~ 30661740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2432491
AGCCACAGTTGACCAGTGAGGTGTTGAGGTTATTCATCTTGTCCTTGAGAATGCCGATCTCGCCCTCCTTCACCTTCATCACCGTCTCCTGTAGCTCCTTGTCCCCCTGCAGCCTTCTGCTATCCATCAGCAGCCTCTCCGTCTCTCGGTCGTATTTCTCCTGGGTCTTCTGAAGCTTCTCGCGGTGCTCCAGGGCCATGGCACTGCGGTTGTAGCTGCACCAGTCGTAGACCTCCTTCAGCTGGTCTTTATCTGCCTGCAGTCTGGCACTGCAACCCTCAATCTCCAATATCTGAGAGCCCACCTTGTTCAGGTATTGCTGGAACTTGTTCTCCACCTCGCGGGACAGACCCGTGCAGTTGTTGCGGATCTGGTCCAGGTGGTGGAGCTGCTTCTCGCAGGTGAGCAGGAAGGGGCTGACATTGGGCAGAAGGTTGTCGATCTTCAACAGGAAGGCTTTAGAGACGTCGGAGATGCCGGCCAGGGATTGGACAAAGTCCTCCTTGCACTTCTTCCTGTAGCCCTCCAGTTGTCTCTGCAGGAAGGTCTTGTCCCTCCGGAGGAAGATGGCCTCCAGGGTCAGGGTGTCCCGGTCCATGGCTGtgttctccatctccatcctcatgAACTGCACCGTCTGACTGAAGTTGGAGCTCACTAGTCCTTTGAGATTGGCGATGAACATGCCAGACCCGTTTGCCACCTGACGCAGACTCATCATATATTTGTCGTTGCGCATCTTGTCAGTCAGGGTGGCGTTCAGGAGCTTCGTCAGGTTCTTTCCCTGCTGCCGGAGGTTGATGTTGTCAATGGAGAGGTGGTTGAAGCTCTTCTCCAGGTCCTTGACCCGGCTCTCGGCCGCCGCGTCTGGGGAGCTCCCGTAGACCAGGAAGAGCACCAGGCTGACGATGATGAGTGACTGGatcagagaggagaagaagaagacaaccctcATGTAGTAGCCACAGCTCTTCCCTCTGGGCTTCTGGATCTTCCTCCTGGCCTCCAAGCCAAACTTGGCCTGGGAGTAACTGCTTTTGTACATGGCTGTTTAGCCGCTgaagcacagtacagtacagaacacccTTACTGAGAAACAGCCAATCACAGACCGATTTAGAGGGTTCAAATGGGGTCCACTTCTTGAGGACCAAGTAGAGAGCGTTAAACCACAAGCACTGAACTCTTCTTTCCCAAACAAAAAGCCAAATAAATAGATAAGATGGGAGATATTTTAGGCAGACCCTGGTAGTGGAGATATCTGATGCAAACCCTGGTAGTGGAGATATCTGATGCAAACCCTGGTAGTGGAGATATCTGATGCAGACCCTGGTAGTGGAGATATCTGATGCAAACCCTGGTAGTAGAGATATCTGAGGCAAACCCTGGTAGTGGAGATATCTGATGCAGACCCTGGTAGTGGCGATATCTGAGGCAGACCCTGGTGGTGAAGATAGTATCCCGCTTCTGAGCTAAGGTAGCACACATTGACAGCCCAAACAGTAAAGTTCCAGTTTTCTCTCCTGAGCGTAATATGGTGTGAAAGT
>TU2432492
AGCCACAGTTGACCAGTGAGGTGTTGAGGTTATTCATCTTGTCCTTGAGAATGCCGATCTCGCCCTCCTTCACCTTCATCACCGTCTCCTGTAGCTCCTTGTCCCCCTGCAGCCTTCTGCTATCCATCAGCAGCCTCTCCGTCTCTCGGTCGTATTTCTCCTGGGTCTTCTGAAGCTTCTCGCGGTGCTCCAGGGCCATGGCACTGCGGTTGTAGCTGCACCAGTCGTAGACCTCCTTCAGCTGGTCTTTATCTGCCTGCAGTCTGGCACTGCAACCCTCAATCTCCAATATCTGAGAGCCCACCTTGTTCAGGTATTGCTGGAACTTGTTCTCCACCTCGCGGGACAGACCCGTGCAGTTGTTGCGGATCTGGTCCAGGTGGTGGAGCTGCTTCTCGCAGGTGAGCAGGAAGGGGCTGACATTGGGCAGAAGGTTGTCGATCTTCAACAGGAAGGCTTTAGAGACGTCGGAGATGCCGGCCAGGGATTGGACAAAGTCCTCCTTGCACTTCTTCCTGTAGCCCTCCAGTTGTCTCTGCAGGAAGGTCTTGTCCCTCCGGAGGAAGATGGCCTCCAGGGTCAGGGTGTCCCGGTCCATGGCTGtgttctccatctccatcctcatgAACTGCACCGTCTGACTGAAGTTGGAGCTCACTAGCTTTAGCAACTGCTCCAGCTGCTGGACCTGGTTTTCTTGCATATTATTGTTGTTGCCATTTGGGGGCATGGCCCTGAAGCATTGGCTCATTCTAAGTTGAATCTGACATATTCCCTTATCATTTTCACACTGAGTCTGTGGATATTAATAACAGACATGCATCAGCACCACATTTTGTCTACCAATAATAATTTGAGTGAAAATTTCACCTACAGATTTAGGATCTGCAGAaacagaaaatgtgaattattatgtgcatTATATACATCTTTTTTAATTATGGACATGTTTTGTAGAGGTTGATCCctttttctgcccctgaacaaggcagttaacctgctgttTCTAggacattgaaaataagaaattgttcttaaatggcttgcctagttaaataaattgaAGTACTACACTGTTGAATTTTCTGCTGTGAAGAACCATTTCCGcagcaacagggtgatcaaattaagatacggcATCTGTACATGCACATTATTGTTGACACTGTTGCAAAAGaagatatatatatctatagaaATGATGAACAGTCAAGTTTAAATCTGAATATACAGTGACTAGTGATTGTTAATGTTTATGACTGTAGGACCACTGTTTTAACCTTTTCAG

Function

NR:

description
plasmalemma vesicle-associated protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2432491 False 1547 lncRNA 0.52 3 30658507 30661740
TU2432492 True 1288 lncRNA 0.46 2 30659807 30661740

Neighbor

gene id symbol gene type direction distance location
LOC110508217 LOC106598972 coding downstream 8672 30629942 ~ 30649835 (-)
LOC110508919 NA coding downstream 211059 30442013 ~ 30447448 (-)
angptl4 angl4 coding downstream 241863 30409271 ~ 30416644 (-)
LOC110508917 LOC106598978 coding downstream 256969 30399711 ~ 30401807 (-)
LOC110508912 NA coding downstream 354095 30301087 ~ 30304412 (-)
LOC110508927 LOC106598960 coding upstream 38802 30700542 ~ 30704777 (-)
LOC110508928 mrpl34 coding upstream 43345 30705085 ~ 30706591 (-)
ptger4c LOC106599187 coding upstream 244139 30905879 ~ 30907975 (-)
LOC110508937 NA coding upstream 316979 30978719 ~ 30980452 (-)
LOC110508938 LOC106598935 coding upstream 333355 30995095 ~ 31004289 (-)
G2127500 NA non-coding downstream 13893 30644334 ~ 30644614 (-)
G2127498 NA non-coding downstream 16182 30642064 ~ 30642325 (-)
G2127497 NA non-coding downstream 16492 30641631 ~ 30642015 (-)
G2127494 NA non-coding downstream 25577 30632714 ~ 30632930 (-)
G2127507 NA non-coding upstream 5983 30667723 ~ 30667989 (-)
G2127508 NA non-coding upstream 7073 30668813 ~ 30669133 (-)
G2127510 NA non-coding upstream 9088 30670828 ~ 30671191 (-)
G2127542 NA non-coding upstream 62392 30724132 ~ 30724541 (-)
G2127455 NA other downstream 103320 30553589 ~ 30555187 (-)
G2127177 NA other downstream 223653 30434435 ~ 30434854 (-)
LOC118944842 NA other downstream 1534765 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1579763 29078039 ~ 29078744 (-)
G2128216 NA other upstream 582351 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 657543 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 1049868 31708667 ~ 31761665 (-)
G2128568 NA other upstream 1220975 31882715 ~ 31883140 (-)

Expression


Co-expression Network