G2127570


Basic Information

Item Value
gene id G2127570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30789034 ~ 30804432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2432570
CGTGGTTTCTGGCCCCATACGTGTAGGTGTAGCTTCCCAGAGGAGTAGTAGATGAAGCCCAGGACCAGCATGGGACACAGGACGAACAGCAGCTTGTGTGACGACTTCATTGTGGTTCTGTCATTCACATGGCACCATGCAGCACATCACCTTATCGTCCCCTTTTCAGAACTGCCTCTTGTAGAAAAGGCTAGACGTAGCTAGCGCTAATTTAAAAAACGAAAAGGTCGCAACCGTATCGCCCCTACTTTTCCGACCATCATCATGAGAACTGTTAGCTGAAGATGTTCGAGAATCACCCTCCCATATTGCGCGcacccct
>TU2432571
ttctttactttccgacacacacacacctttttttaccgcaccattggttagagcctgtaagtaagcatttcctcgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttcaccgtaccattggttagagcctgtaagtaagcatttcaccgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttcaccgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttccccgtaccattggttagagcctgtaagtaagcatttcaccgtaccattggttagagcctgtaagtaagcatttcaccgtaccattggttagagcctgtaagtaagcatttcaccgtaaggtctactacacctattgtattcggcgcacgtgacaaataaactttgatttgattcaaagTGGCCTTCCTGCCCCAGACAGAGGCCTGACACAGAAACATTGAAGCATTAACTGCAAGCTACACAAACAGCTTTTTGGCCTGACATATTCTGTCACTTAAAATGGGTTACATCTGCAGTTACATGGAAGAGGGAAAACAGCCGTGGACATGGTGAAAAAACGTGAGGCCTTCACTAGGAAGCTTGAGTTGTTCCATTTGGACTTTATCTGGAAAGCTACTTGCACTTCAGCACATCCGGGATGTGCTCAGGAGTGCCGAATCCTTGTGTGCGTTGTGGGTGGCATGCTCAGAGGAATACAGCACAATAAAGAAACTTTGACTTACACCTGCAAGTACCCATTTTCCTCTATGAACCCAATATAGACTCACGACAGGAACCGGCTTTCACATAAGTCAATCGAGGACTGCCTGCGCATCAAAATCACACCCATATCACACGACAACTTTTCCCATTGAGTAAGTCACTTAGTGGCCTAAATTTAGTAAATACTAACATTAATGTGAATGGTTATCCAGGGATATTTAGGTCTCAAGCTGACAGTAATTTCTGTTTGTTCTGTCGTTATTTAGCAGGCTATCCCGATCAACACATCGCTTTTTTCTTTTAATGATTGTTTTATGTAGGATGCTACATTTTTGTTGAGTTGCAATTGTAAATAGgcctaaaaaatgttttttaaatttattgtGAAAGATGCTGTTGAGCCTCACaacttaactggctgaggtaggctatTTTATATAGACCTAGGCTCGGAAGAAATAGACTCCAATTAAGCCCCCGTGTTTagtaaagtcaaattaaaatgaagattGTTGAAATTAATTACTCGACTGGTATAGGTTTTTTCCCCATCTGTTGCTATATTAACTATAACTTAGCTATATTTTCAGTACAAGACACTGTTCACCTATTGATTGCGCTGCGGTTGAAGCATTACGTTTCGGCACCACAAAAtggtcacacaaacacacatttgaagtcggaagtttacacacttaggttggagtcattaaaactcatttttcaaccactccacaaatttcttgtcaacaaactacagttttggcaaatcggttaggacatctactttgtacatgacacaagtcattttcccaaaattgtttacagacagattgtttcacttataattcactgtatcaattccagtgggtaagaagtttacatgcactaagttcactgtgcctttaaacagcttggaaaattccaagaAAATGATATCAAGGCTTTAaaagcttccgataggctaattgacataatttgagtcaattggaggtgtacctgtggatgcatttcaaggcctaccttcaaactcagtgcctctttgcttgatatcatgggaaaatcaaaagaaatcagccaagacctcagaaaagaattatagacctccactagtctagttcatccttgggagcaatttccaaacgcctgaaggtaccacattcgtctgtacaaacaatagtatgcaagtataaacaccatgggaccacgcagtcgtcataccgctcagaaaggagatgcgttctgtctcctagagatgaacgcactttggtgcaaaaagtacaaatcaatcccagaacagcaaaggaccttgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaaccagtcctatatcgacataacctgaaaggctgctcagcaaaaaagaagccactgctccaaaaccaccataaaaaagccagactacggtttgcaactgcacatggggacaaatataatatttggagaaatgtcctctggtctgatgaaacaaaaatgaaactgtttggccataatgaccattgttatgtttggagaaaaacaGGGGAGGcttgagaacaccatcccatccgtgaagcacaggggtggcagcatcatgttgtgggggtgttttgccaGAGACAATGAGTTGCTCATTGGCTCATTGGCTCCGTGGAGCCCCATAATTtgaataacaaaataaaaaacatttagcTGTTTGCTAGGCTAGTTGTATTCTGATGCTTAAAATCTAAGCAAATAGGTTGTGTGGTTGGAATTGCAGTATGTATTTAGTTTGAAAATCTAGATGTGACCTAGCAACTTTTGACAGACTGGTTTCATCTGGACAATCAAAAAATGGTTGCTTAGCAATCGGATACCAAGttgttctgtggagagaaaaaaagtgaCAGAGTCCCAGTACTTGGATAAATCATTGTGATTGGAGGATATCTGTGAGGGTTATCAAATCAGGATCAACTCCTCTCATCATCTTCAGCTCATTAATGATTTTCTTCTaactttttacctgggctttTGATCATGACAAACTCCAGTCCCTGCCGGTGACAAACATACCCatatcatgatgctgccaccacaatactttaAAATACATCTGGAATCAGGAACATTAAACTTACTCCACATTAATGGCCAGTATGAGAAAAAGAAGGACGCCTGTGCTAAAAGAATCCCCTCCAAATCATCtcttctgtttgcaacaaggccgTTAAGTAATCTTGCAAGACaccaaagaaattaactttttggcctaaattaaAAACTACaggtttgggtcaaatccaatacaaagtaaaaaataaaaaaaataaactgtattttcaagtattgtggtggcagcattcTCTTATGGGCGAGGCTAGTGTAGAATGTATGTAGAAATAAGATTATAATAACTCTTCACAGCAACCACTAGAACAGAGACGACAGATATTCTCCAGGGGTTAAAAGAAAAGGCATACTGTATCCTGATTCTATAGGTATGACTAGAAGATTCTATAGGAGAGGACTATTCATAGCAGCACctaatcataaaaaaaTTTAAAAAACGAAAAGGTCGCAACCGTATCGCCCCTACTTTTCCGACCATCATCATGAGAACTGTTAGCTGAAGATGTTCGAGAATCACCCTCCCATATTGCGCGcacccct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2432570 False 322 lncRNA 0.50 2 30789034 30804432
TU2432571 True 3561 lncRNA 0.40 3 30789034 30795981

Neighbor

gene id symbol gene type direction distance location
LOC110508928 mrpl34 coding downstream 82443 30705085 ~ 30706591 (-)
LOC110508927 LOC106598960 coding downstream 84257 30700542 ~ 30704777 (-)
LOC110508217 LOC106598972 coding downstream 139199 30629942 ~ 30649835 (-)
LOC110508919 NA coding downstream 341586 30442013 ~ 30447448 (-)
angptl4 angl4 coding downstream 372390 30409271 ~ 30416644 (-)
ptger4c LOC106599187 coding upstream 101447 30905879 ~ 30907975 (-)
LOC110508937 NA coding upstream 174287 30978719 ~ 30980452 (-)
LOC110508938 LOC106598935 coding upstream 190663 30995095 ~ 31004289 (-)
LOC110508940 gbg12 coding upstream 279883 31084315 ~ 31136167 (-)
LOC110508941 gp177 coding upstream 333654 31138086 ~ 31169294 (-)
G2127557 LOC105030512 non-coding downstream 32593 30748948 ~ 30756441 (-)
G2127542 NA non-coding downstream 64493 30724132 ~ 30724541 (-)
G2127510 NA non-coding downstream 117843 30670828 ~ 30671191 (-)
G2127508 NA non-coding downstream 119901 30668813 ~ 30669133 (-)
G2127584 NA non-coding upstream 9801 30814233 ~ 30814734 (-)
G2127609 NA non-coding upstream 69987 30874419 ~ 30875011 (-)
G2127614 NA non-coding upstream 78751 30883183 ~ 30883411 (-)
G2127615 NA non-coding upstream 80033 30884465 ~ 30884785 (-)
G2127637 NA non-coding upstream 119815 30924247 ~ 30931466 (-)
G2127455 NA other downstream 233847 30553589 ~ 30555187 (-)
G2127177 NA other downstream 354180 30434435 ~ 30434854 (-)
LOC110508917 LOC106598978 other downstream 387227 30399711 ~ 30401807 (-)
LOC118944842 NA other downstream 1665292 29118684 ~ 29123806 (-)
G2128216 NA other upstream 439659 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 514851 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 907176 31708667 ~ 31761665 (-)
G2128568 NA other upstream 1078283 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 1218626 32023057 ~ 32029225 (-)

Expression


Co-expression Network