G2128242 (LOC106584167)


Basic Information

Item Value
gene id G2128242
gene name LOC106584167
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31319283 ~ 31323364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2433314
TCTAAGACTTGAAGTGTTCTATATGATCAACACAGAGGGGTAGAGGATGATAGTTCTCTCATAAACCTGTGGTGAAGGCTGAACACCTCACTGCGGATCCTGTCGGGAGATACAATGTGTCCATGTCTCTTCGCCGTGGATCTGTTTGTGTGAAGATTGATCAAGACCAGACCATCGGCCCTGTAATAAGACATGGCCTTTGTCATTATACAATGGGATTCTGGAAAAACTTGTTTTATTTGACTATTCAAAGTCATTAAATCAACCCAAGTAATCCAGTGTTGTACCACATCAccatcctcttctcctcagcACAAAACGATTCCCTGGCTACGACGTGGAGGGCAAAGAGTTCAACACAGAGATGCATCGCAAACACATCATGGGCATGAACGTGTCGGACTACATGAGCTACCTGATGGAGGAGGACGAAGACGCCTACAAGAAAGTTCTCGCGCTTCATAAAGAACGGAGTCACGCCAGACACAgtagaggagatgtacaAGAAAGCACACACCGCCATCAGAGAGAACCCAGTCCACGAAAAGAAACCCAAAAAAGACGTCAAAAAGAAGAGGTGGAACCGCGCCAAACTTTCGCTGGCACAGAGAAAGGACCGCGTCGCCCAGAAAAAGGCCAGCTTTCTACGAGCACAGGAAGCAGAGGCAGCGGACGGTTAGAGGGACGGGGACCACTGCCCGTTCCAAAGACAACCACTGCACATTGGCTTAATAAATTTATT
>TU2433312
GTCAGCTTATTTTACCAGCTCTCTGGAAAAGGCTGTCAACTGAGAAGTTGGAAAATCTGCAAAAATGggCTTCGTGAAAGTAGTGAAAAGTAAGGCGTACTTCAAGAGATACCAGGTGAAATTCAGGAGAAGGCGAGAGGGTAAGACTGACTACTTCGCCCGTAAGCGCCTGGTCATCCAAGACAAGAACAAGTACAACACACCCAAATACAGGATGATTGTGAGGTTCTCCAACAGAGATATCTGTTGCCAGGTGATTGCTGGTGGGCTGTTGCGTGCAGACTTGGTGTGATTTCAACAACGGGAGACCAGATTGTCGCTGCTGCCTATTCCCATGAGCTGCTCAAATATGGTATCACCGTGGGACTGACAAATTACGCTGCAGCCTACTGCACGGGCCTTCTGCTGGCCCGCAGGCTACTGAACAAGTTCGGCCTGGATCAGGTGTACGAGGGCCAGGTGGAGGTGACTGGAGACGAGTTCAACGTGGAGAGTATAGACGGCCAGCCGGGGGCCTTCACGTGTTTCCTAGACGCCGGGCTCGCCAGGACGTCCACAGGAAACAAGGTGTTCGGAGCACTAAGGGTGCTGTCGACGGTGGCCTCTCAATTCCTCACAGcACAAAACGATTCCCTGGCTACGACGTGGAGGGCAAAGAGTTCAACACAGAGATGCATCGCAAACACATCATGGGCATGAACGTGTCGGACTACATGAGCTACCTGATGGAGGAGGACGAAGACGCCTACAAGAAAGTTCTCGCGCTTCATAAAGAACGGAGTCACGCCAGACACAgtagaggagatgtacaAGAAAGCACACACCGCCATCAGAGAGAACCCAGTCCACGAAAAGAAACCCAAAAAAGACGTCAAAAAGAAGAGGTGGAACCGCGCCAAACTTTCGCTGGCACAGAGAAAGGACCGCGTCGCCCAGAAAAAGGCCAGCTTTCTACGAGCACAGGAAGCAGAGGCAGCGGACGGTTAGAGGG
>TU2433313
GTCAGCTTATTTTACCAGCTCTCTGGAAAAGGCTGTCAACTGAGAAGTTGGAAAATCTGCAAAAATGGTAAATATACTGTCGTCATATACTGTCAACATTAAACATGTTATGCTATTACTTGTCTTGTGCATTTCTATGTCTGGTGTTTGTTTCTTTTGAAATGGATGACGTTGGATTTGTGATATGAACTTTCACCGGTCAGCTGAATGCTAGGTTCCAGCGTGGTGATATGGCGCTCAAAGGCCTTACTTTGACATTTCCTAGTAATAAATAATGTCATGCCAATTGCATAACGTGTTTGTTGTTAATATATCGGCCTGCTTATCCTCCATGCGAATGAAACTGGTCATTGTGTGAAGAAGTCGTCAGTCGATACTCTTGCTTGAAAGTCCTAACGTTACCTAGCAAGTTAAGTTTGCAAATTGGCGACCAGTCTGAAGAAAAGTGTTTCAACAGCTAGCTGTTCCATGGAGATCGTACACTTCAGTAATATGTATTGCACGTTAGGTGAGTGACACCCATATGTCACCAGAAATATGCAATGGCAgctgtctcacctctcctctccacagggCTTCGTGAAAGTAGTGAAAAGTAAGGCGTACTTCAAGAGATACCAGGTGAAATTCAGGAGAAGGCGAGAGGGTAAGACTGACTACTTCGCCCGTAAGCGCCTGGTCATCCAAGACAAGAACAAGTACAACACACCCAAATACAGGATGATTGTGAGGTTCTCCAACAGAGATATCTGTTGCCAGGTGATTGCTGGTGGGCTGTTGCGTGCAGACTTGGTGTGATTTCAACAACGGGAGACCAGATTGTCGCTGCTGCCTATTCCCATGAGCTGCTCAAATATGGTATCACCGTGGGACTGACAAATTACGCTGCAGCCTACTGCACGGGCCTTCTGCTGGCCCGCAGGCTACTGAACAAGTTCGGCCTGGATCAGGTGTACGAGGGCCAGGTGGAGGTGACTGGAGACGAGTTCAACGTGGAGAGTATAGACGGCCAGCCGGGGGCCTTCACGTGTTTCCTAGACGCCGGGCTCGCCAGGACGTCCACAGGAAACAAGGTGTTCGGAGCACTAAGGGTGCTGTCGACGGTGGCCTCTCAATTCCTCACAGcACAAAACGATTCCCTGGCTACGACGTGGAGGGCAAAGAGTTCAACACAGAGATGCATCGCAAACACATCATGGGCATGAACGTGTCGGACTACATGAGCTACCTGATGGAGGAGGACGAAGACGCCTACAAGAAAGTTCTCGCGCTTCATAAAGAACGGAGTCACGCCAGACACAgtagaggagatgtacaAGAAAGCACACACCGCCATCAGAGAGAACCCAGTCCACGAAAAGAAACCCAAAAAAGACGAGGTGGAACCGCGCCAAACTTTCGCTGGCACAGAGAAAGGACCGCGTCGCCCAGAAAAAGGCCAGCTTTCTACGAGCACAGGAAGCAGAGGCAGCGGACGGTTAGAGGG

Function

NR:

description
60S ribosomal protein L5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2433314 False 742 TUCP 0.48 3 31319283 31320623
TU2433312 False 991 TUCP 0.52 7 31319341 31323364
TU2433313 True 1486 TUCP 0.49 6 31319341 31323364

Neighbor

gene id symbol gene type direction distance location
LOC110508945 LOC106598921 coding downstream 14072 31246275 ~ 31305211 (-)
LOC110508943 LOC106598918 coding downstream 39281 31259069 ~ 31280002 (-)
LOC118944807 LOC106598929 coding downstream 64346 31253933 ~ 31254937 (-)
LOC110508942 LOC106598932 coding downstream 105204 31173927 ~ 31214079 (-)
LOC110508941 gp177 coding downstream 149989 31138086 ~ 31169294 (-)
LOC118944817 NA coding upstream 18438 31341802 ~ 31343993 (-)
LOC110508952 NA coding upstream 20631 31343995 ~ 31351517 (-)
cdc7 cdc7 coding upstream 38347 31361711 ~ 31369517 (-)
LOC110508218 LOC106598907 coding upstream 51005 31374369 ~ 31397685 (-)
znf326 znf326 coding upstream 83335 31406699 ~ 31410904 (-)
G2128200 NA non-coding downstream 35428 31245122 ~ 31283855 (-)
G2128215 LOC100380853 non-coding downstream 76842 31242167 ~ 31242441 (-)
G2128197 NA non-coding downstream 99374 31219062 ~ 31219909 (-)
G2128266 NA non-coding upstream 48225 31371589 ~ 31371788 (-)
G2128288 NA non-coding upstream 61841 31385205 ~ 31385435 (-)
G2128292 NA non-coding upstream 71490 31394854 ~ 31395201 (-)
G2128216 NA other downstream 74591 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 612738 30705085 ~ 30706591 (-)
G2127455 NA other downstream 764096 30553589 ~ 30555187 (-)
G2127177 NA other downstream 884429 30434435 ~ 30434854 (-)
LOC110508917 LOC106598978 other downstream 917476 30399711 ~ 30401807 (-)
LOC110508968 LOC106598866 other upstream 388244 31708667 ~ 31761665 (-)
G2128568 NA other upstream 559351 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 699694 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 738685 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 905042 32228406 ~ 32230258 (-)

Expression


Co-expression Network