G2130055


Basic Information

Item Value
gene id G2130055
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32719237 ~ 32720885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2435506
taattaacatgtgtaaatatttgttgaacataagattcaacaactgagacataaactgaacaagttccacagacatgtgaataacagaaattgaataatgtgtccctgaacaaaggaggggggtcaaaatcaaaagtaacggTCAGCATCTtctgtggccaccagctgcattaagtactgcagtgcatctcctcctcatggactgcaccatatttgccagttctagctgtgagatgttaccccactcttccaccaaggcacctgcaagttcccggacatttctggcggtaatggccctagccctcaccctccgatccagcaggtcccagacgtgctcaatgggattgagatccgggctctttgctggccatggcagaacactgacattcctgtgttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcagaatgagcctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaacacataacgttgagattgcctgcaatgaccacaagcccagtccgatgatgctgtgacacaccgccccagaccatgaccaaccctccacttccaaatcgatccccctccagagtacaggcctcggtgtaacgctcattcctttgacgataaacgcgaatccgacaatcacccctggtgagacaaaataggcgacgttgttgccggtgatgtctggtgaggacctgccttacaacaggcctacaagccctcagtccagcttctctcagcctattgcagtctgatcactgatggagggattttgcattcctggtgtaactcgggcagttgttgttaccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtgttacacgtggtctgccactgcgaggatgatcagctgtctgtcctgtctctctgtagcgctgtcttaggtatTGGTACctacattgcaatttattgccctggccacatctgcagtcctcatgtctccttgcagcatgcctaaggcacgttcacgcagatgagcagggaccctggacatctttcttttggtgtttttcagtcagtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaacatctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgggaaacagtgtttcaaCCCTTTACAATAAGGATCTGAGAAGTTATTAGGATTttttaattatctttgaaagacagggtcctgaaaaagggacgttcctttttttgttgttgctgagttcatgtaggtaggtaggtaggtatgaatgtatggggggggggggacacaagggttagtcattcaaaaataatgtcaAACCCCTATAAtttcacacagtgagtccatgtaacttacagttctgtgaaaaagtatttgccccgttcctgatttattttttttgcacatttgtcacacttaaatgtttcagatcagAAATGTTTTGAAtctcaaaatataaaatatattttgatttgtttaacacttttttggtaacgacatgtttctatatgtgttatttcgtagttttgatgtcttcactattattctacaacgtagaacgtagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2435506 True 1649 lncRNA 0.46 1 32719237 32720885

Neighbor

gene id symbol gene type direction distance location
ahsg2 LOC106598792 coding downstream 14941 32700038 ~ 32704296 (-)
LOC110509006 LOC106598799 coding downstream 63794 32628300 ~ 32655443 (-)
cpdp LOC106598802 coding downstream 104698 32598428 ~ 32614539 (-)
LOC110509003 LOC106598805 coding downstream 204371 32462184 ~ 32514866 (-)
LOC110509001 LOC106598815 coding downstream 386818 32312071 ~ 32332419 (-)
LOC110509013 crb1 coding upstream 15263 32736148 ~ 32751440 (-)
LOC110509017 LOC106599177 coding upstream 65021 32785906 ~ 32788215 (-)
LOC118944826 LOC106597593 coding upstream 69268 32790153 ~ 32795726 (-)
LOC110509016 LOC106597593 coding upstream 77224 32798109 ~ 32803677 (-)
LOC110509015 LOC106597593 coding upstream 84640 32805525 ~ 32812024 (-)
G2129998 NA non-coding downstream 154029 32565005 ~ 32565208 (-)
G2129919 NA non-coding downstream 213366 32505336 ~ 32505871 (-)
G2129099 NA non-coding downstream 293796 32379801 ~ 32425441 (-)
G2129103 LOC105028918 non-coding downstream 316505 32399453 ~ 32402732 (-)
G2129095 NA non-coding downstream 344142 32374665 ~ 32375095 (-)
G2130058 NA non-coding upstream 3086 32723971 ~ 32724470 (-)
G2130060 NA non-coding upstream 4409 32725294 ~ 32725766 (-)
G2129953 NA non-coding upstream 6892 32727777 ~ 32732290 (-)
G2130086 NA non-coding upstream 101141 32822026 ~ 32822820 (-)
G2130088 NA non-coding upstream 103508 32824393 ~ 32825566 (-)
LOC110508997 NA other downstream 489023 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 554215 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 690679 32023057 ~ 32029225 (-)
G2128568 NA other downstream 836097 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 981745 31708667 ~ 31761665 (-)
G2130393 NA other upstream 677662 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1319321 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1320553 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1320684 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1764984 34485869 ~ 34486176 (-)

Expression


Co-expression Network