Gene
RNA
| Item | Value |
|---|---|
| gene id | G2129406 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 32923200 ~ 32923666 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: pogo transposable element with KRAB domain |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2434739 | True | 429 | lncRNA | 0.45 | 2 | 32923200 | 32923666 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509022 | b3galt2 | coding | upstream | 11268 | 32872931 ~ 32911932 (+) |
| LOC110508224 | kcnt2 | coding | upstream | 86762 | 32814704 ~ 32836798 (+) |
| zbtb41 | zbtb41 | coding | upstream | 138911 | 32759166 ~ 32803922 (+) |
| LOC110509011 | LOC106598790 | coding | upstream | 204353 | 32710595 ~ 32718847 (+) |
| LOC110509009 | LOC106598794 | coding | upstream | 232701 | 32685536 ~ 32690499 (+) |
| LOC110509024 | LOC106598521 | coding | downstream | 126946 | 33050612 ~ 33070407 (+) |
| LOC110509025 | LOC106598617 | coding | downstream | 200806 | 33124472 ~ 33126977 (+) |
| LOC110509026 | LOC106598516 | coding | downstream | 232975 | 33156641 ~ 33165714 (+) |
| LOC110508226 | LOC106598614 | coding | downstream | 253086 | 33176752 ~ 33212483 (+) |
| LOC118944857 | LOC106568727 | coding | downstream | 307856 | 33231522 ~ 33247262 (+) |
| G2129307 | NA | non-coding | upstream | 68833 | 32854020 ~ 32854367 (+) |
| G2129389 | NA | non-coding | upstream | 79907 | 32843083 ~ 32843293 (+) |
| G2129300 | NA | non-coding | upstream | 82364 | 32838135 ~ 32840836 (+) |
| G2129385 | NA | non-coding | upstream | 104392 | 32818520 ~ 32818808 (+) |
| G2129411 | trove2 | non-coding | downstream | 6406 | 32930072 ~ 32930623 (+) |
| G2129429 | rgs1 | non-coding | downstream | 31286 | 32954952 ~ 32957377 (+) |
| G2129522 | NA | non-coding | downstream | 167485 | 33091151 ~ 33092647 (+) |
| G2129530 | NA | non-coding | downstream | 182310 | 33105976 ~ 33106435 (+) |
| G2129552 | NA | non-coding | downstream | 230892 | 33154558 ~ 33154799 (+) |
| G2129371 | crb1 | other | upstream | 173632 | 32748928 ~ 32749568 (+) |
| pfn2l | LOC106598797 | other | upstream | 222356 | 32631289 ~ 32700844 (+) |
| G2128753 | NA | other | upstream | 648820 | 32269318 ~ 32274380 (+) |
| LOC110508984 | NA | other | upstream | 867545 | 32053231 ~ 32055655 (+) |
| G2129639 | LOC106598496 | other | downstream | 384432 | 33308098 ~ 33308991 (+) |
| G2129708 | NA | other | downstream | 508085 | 33431751 ~ 33432107 (+) |
| G2129724 | LOC106598452 | other | downstream | 528546 | 33452212 ~ 33452873 (+) |
| G2129765 | LOC106598425 | other | downstream | 648442 | 33572108 ~ 33575970 (+) |
