G2130985 (LOC106598299)


Basic Information

Item Value
gene id G2130985
gene name LOC106598299
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34288160 ~ 34289974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2436573
agtaaatactttaactctagttcttgaactgcattgttggttgagggcttgtaagtaagcatttcacggtaaggtatcatgtgacaaataaaggtTGATGTGTTTCAATGACATTGAATACCTTGTGTACTTACATGAGCAATGGTAAACTCATTGAAGCAACTGTCGCTGGTGCCAACGTTGACACAATATTAAGCACGTTTTTTTTGTCCTTATGAATTATAATCTTACAGTCAGTATTTGTCAACTGGAAATGGGATCGCAATGGGATATACCTTTTTATAACTACAAACCACAAGCTGATATAGTTTGCTTTTATCTGACTCACCTTGAACATTAACAGTCATGTGAGCTGTAAGGTTTCCTACGACGTTGTGGGCCACGCATTCATACTCTCCCCCGTGGGACCATGACGCTTCTTCCACCAATAGGGTCGCTCCCTCTCCTGCCACGACTGAGCGGCCATCTTGGTCCAGTTTTCTCCACAACACAGTAGGTTCAGGGTTCCCCTCAGCACGACACGTCAGTGTAAAACCGTCTCCGATTTTCACCTGAGTGTTCTCTGAGATAGTGATATTTCT

Function

NR:

description
vascular cell adhesion protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2436573 True 581 lncRNA 0.43 2 34288160 34289974

Neighbor

gene id symbol gene type direction distance location
extl2 extl2 coding upstream 9459 34269056 ~ 34278701 (+)
LOC110509053 LOC106598276 coding upstream 30329 34251924 ~ 34257831 (+)
LOC110509059 LOC106598314 coding upstream 114993 34127630 ~ 34173167 (+)
LOC110509049 LOC106598340 coding upstream 252230 34029842 ~ 34035930 (+)
LOC110509047 LOC106598344 coding upstream 269786 34013895 ~ 34018374 (+)
LOC110508236 LOC106598267 coding downstream 62618 34352592 ~ 34409491 (+)
LOC110508231 LOC106598235 coding downstream 209572 34499546 ~ 34568352 (+)
LOC110509061 LOC106598202 coding downstream 331881 34621855 ~ 34632610 (+)
agfg1b LOC106568704 coding downstream 350045 34640019 ~ 34646660 (+)
fbxo36b LOC106598179 coding downstream 358877 34648851 ~ 34652522 (+)
G2130983 NA non-coding upstream 5316 34282639 ~ 34282844 (+)
G2130978 NA non-coding upstream 34868 34253013 ~ 34253292 (+)
G2130976 NA non-coding upstream 41398 34246455 ~ 34246762 (+)
G2130974 NA non-coding upstream 46595 34241314 ~ 34241565 (+)
G2130892 NA non-coding upstream 137435 34095720 ~ 34150725 (+)
G2130994 NA non-coding downstream 15877 34305851 ~ 34307822 (+)
G2131042 NA non-coding downstream 85409 34375383 ~ 34375784 (+)
G2131055 NA non-coding downstream 112110 34402084 ~ 34402302 (+)
G2131323 NA non-coding downstream 204822 34494796 ~ 34495154 (+)
G2130749 LOC106598333 other upstream 219066 34038792 ~ 34069094 (+)
G2130731 NA other upstream 279898 34007631 ~ 34008262 (+)
G2129859 NA other upstream 558632 33729148 ~ 33729528 (+)
G2129765 LOC106598425 other upstream 712190 33572108 ~ 33575970 (+)
G2129724 LOC106598452 other upstream 835287 33452212 ~ 33452873 (+)
G2131383 NA other downstream 313511 34603485 ~ 34604953 (+)
G2131416 NA other downstream 397297 34687271 ~ 34687640 (+)
G2131426 NA other downstream 412232 34702206 ~ 34783418 (+)
G2131933 NA other downstream 801725 35091699 ~ 35093034 (+)

Expression


Co-expression Network