G2131851 (LOC106598110)



Basic Information


Item Value
gene id G2131851
gene name LOC106598110
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34936508 ~ 34945229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2437620
tttttattacacagCAActtgacaaatatatatatttatatagtttttGCCACATTGGCGGTGGATCAATAATcaacaaaatagtaaaacaaTCACTTAAACCAAAAATAATCAAAcgtcacatactcacacacaccaatACTATTGACACTAAAAGGACAGTCAAGTTGAACATCAACAATGATCATCCAGGTCTATATGTGATTGAAAGACTAATCAAATGTTTCGACAAATATGTGAAAAGGATGTGAATAAACAACctcaaaagataaaacagtacaacaagattattatatatttttttttaccttaaacGTAATCTATAAAAATCAAATAATTTattaagtcacacacacacaatacaatataatgtcaaacaaaaaaaagTTGTAAGGTTACAATTGTGAAAATGTATTGTTAAAACAAGAGGCCTCTCGGAACTTTAAAGACCCTcactcccttcggtctcaacatAGACTTTtaatctgaagccattcttgtgattattgtgattttgctGTTCATTGTAAATGTCTGTTGGCTGATGTAGCTGAATTGTATCTATGATCATAtatccattttttttatatatgttCTATTTATATCTGTAAATCGACCAATGATATCAAGCCACACCCAGCCATGATTACAGAGACAACTAGTGacccgcagtgtttgtcattataccctgatgaagacagcttgtctgtccaaacgttggttattaaattattacatctgagctcctagagtgtgatGCTTTTCTTTTTCAAAAGCTACGACAGCAACATGCTTCCAGAAAGTTCTATGAATGAAAATATATAGATCTGAAGACTGAGGGCCGGtttccccagacacagattaagcctagacATGGACTAAAAATAATTCTAAATGGAGATTCTTCTCTGCttttttttagtccaggactaggccaAACCCATGTCTGGGAATGGTACCCTGCTAGAGCTGGGTCCAGATTCTACTACCTTGGTCCAGATTctACTACCTTAGTCCATATTCTACTACTTTGGTCCAGATTCTAGTACCTTGGTCCAGATTCTACTACCTTGGTCCAGATTCTACTACTCTGGTCCAGATTCTACTACCTTGGTCCAGACTCTACTACCTTGGTCCAGATTCTACTACCTTGGTCCTGATTCTACTACCTTGGTCCAGACTCTACTACCTTGGTCCTGATTCTACTTTTGTTAGAGGTGCTGCAGATGAAGTTGAGCTCTTCTGTGTCAGGCAGACTGACCCACTGGTGTCCTCCATCTTTCTCTACCGCCCCGGTACTCCTCACTCCGGTTCTCCCACAGTCCTTCATGACGGTCCCGTTTCCCGAAGCCCAGTTGTTGTAGCAGGTGGACTCTCCACTGACCCAGAACCAGAGGTTCAAAGTGCAGGTGAAGCGCAAGCCCAGCCACACATGAGGAGTGGAGGCTCTCTTGGCCTGGGCCTCCACCCATCTCTGGACCTCGTCAGAGTGGACAGAGACCAGGTCGTTGTGTTGCTCTCTGCAGTAGGCCAGGGCGTCTTTCCACGTCTTATTCTGATGGATCAAGATCACCTTATCTGAGGAAAAAAAAACGAGTTTGTGATATTATAACACAGCctttttcaaacctctcctcgggtaCCCCAGCCATACCATGCATTTGATTTATTCTAGATcgagcacacctgattcaacttgtcaactaatcatcaagcccttaaATCAGGTGAATCACGTGAATCAGGTGAATCAGGTGAATCAGGTGAACTAAATGTCTaggggtcccagaggagaggtgtGTAAAATCTTGTTATAACCAACATTCAGTGGTGTAGCTGTAGTTTACTCCATGCTATAACTCAGCAACATTAGATATGCCATAAACAGAGGAGGGGGTCACTCACTGTAGTAGCAGAAGAAAGGTTGTTTTTCATCACACTTCTGAAAACCCCAACGCCCGGAATAGTTCATAAATGTCACAGCACAGGTCTGATTCCCTCCGGTGTTATCGTGTTGTCTCTCATGCCAGTTTCTGAATGAGCAGTTACTCTGGTCCGACCACTTCCAGAAGCCTCTGAACAGGCCAATCCACACACTATCACCACTAGCCAGTCTAAATATCTCCTCGTTCTCAGTCTGGTTCCTCACACTGGCCAGGTCTGTGTGATTCTCCCTACAGTACATCTGAGCATCTCTCCAAGTCATCTGAGTATTATAAATAAAATTGAATTTCGTACCAGAACTGTTCAGTCTGTCATAGCAGATAAATGCATGTGAATTGTTGCAATTAGATGTATTCCATTGGCCACCGTTGCTCATCATCACACAGTCCTCGTTCCCTTCCCTGTTATTTGGTTCGTCTTGGCGCCAGTTGAAATATCCCTCACTGCAATCATCGTCTGACCACTGCCACTCTCCCTTCCAGTCTCCCTTCTTTAACCCTATCCAGGCTGCTTCAGTATAATTACTGTGTACAGCTTTCATCTGTCTGTCCAAGTCCTCCACGTTGTCTATGGTGGCCAGGTCCGTGTACCGCTGTCTGCAGTAACTCTGTGCTTCAGTCCAGGTCTTATTTTGGTTCACAAACTGATACTCGTCATGAGAGAGGCATGTTGCAGATGAACAGTGTCCCGCTAGACTGCCATATACCTCCACCTCACACAGAGTGAGAATTTGGTCATTGCCACGGATGATCACACTGACATAgtgtccctccatctctttacacTGGAAGGTCTGGTTCTGTCCTGCTGAGATGCTGGAGATGTCTGCACATATGGGGTTGTTGTTGCCGTTGTTCTTCAGTGAATTACCAATACGAATCTCTGCACCATTGAGCCTCTCAGGATTGCTGTTTCTGTTGGTGATTACAACAGTAGTCACTTTGTACACATCCAGCAGGTTCACTCTCCACCAGGGGTTGGTCTCCTTCATTGTGTGGGTGCAGGATCCATTGTCGGCGTTTGGGTCTTTGTTCCCGTCAATGGCATTAGAAGCTTTCACATGATTAACATTAGTATTAGGAGCAGAGTACAGTGATGACTGAGTGGCCACTCCTTGTAACGCAACGTTTACTGTTGAGGTGCTGCTCATCTGGGCTAATAACGCAACTCCCATTAAAGAGCAGAGAGATAGACTCCACTGCATGGTTAGTGGTGGAGGCTTCATTCAATCATCTGTCTTCTGTCCTCTGTTCGATTTGaagttctctctgtgtctctctcactcgttCTGTACATCCGTCACCTTTACTTGCCGATATATCATCCTTTTGTACACAATGAAACTCTTTCATGATTCATATCCTGGGACATGTACAGCCTGCTGTACCTAGCCAGACCTGTATCTATGCTATGCAAAGCAGTGTTTTGTAGTTTGAGTACATGCTGTTTTTTTTTGGTTTTCCACGCCGTTGGTTGCTCCATGCAAATAATGGATATTTTAGGTTTTGTTTGTGGTAACAGGGTGAGAGTGTGCGTCCCTCTCCTATTCAAATAGATTTATACTCTTC

Function


NR:

description
macrophage mannose receptor 1-like isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2437620 True 3512 lncRNA 0.43 4 34936508 34945229

Neighbor


gene id symbol gene type direction distance location
anxa13l anxa13 coding downstream 14896 34911095 ~ 34921612 (-)
LOC110508238 LOC106598127 coding downstream 47578 34868513 ~ 34888930 (-)
LOC110509075 LOC106598143 coding downstream 111973 34812717 ~ 34824535 (-)
LOC110509071 LOC106598156 coding downstream 129694 34773755 ~ 34806814 (-)
gk5 gk5 coding downstream 175085 34737462 ~ 34761423 (-)
LOC110509086 LOC106598057 coding upstream 146993 35092222 ~ 35105019 (-)
trnaw-cca-62 NA coding upstream 187326 35132555 ~ 35132626 (-)
trnaw-cca-63 NA coding upstream 188634 35133863 ~ 35133934 (-)
trnaw-cca-64 NA coding upstream 190193 35135422 ~ 35135493 (-)
trnaw-cca-65 NA coding upstream 191752 35136981 ~ 35137052 (-)
G2131836 NA non-coding downstream 44418 34891885 ~ 34892090 (-)
G2131824 NA non-coding downstream 60818 34875054 ~ 34875690 (-)
G2131816 NA non-coding downstream 69265 34866665 ~ 34867243 (-)
G2131809 NA non-coding downstream 81971 34853560 ~ 34854537 (-)
G2131736 NA non-coding downstream 251240 34684981 ~ 34685268 (-)
LOC110509081 LOC106598107 non-coding upstream 11430 34925386 ~ 35056378 (-)
G2131873 NA non-coding upstream 32076 34977305 ~ 34977703 (-)
G2131880 NA non-coding upstream 45781 34991010 ~ 34991812 (-)
G2131906 NA non-coding upstream 96737 35041966 ~ 35042678 (-)
G2131950 NA non-coding upstream 123289 35068518 ~ 35069139 (-)
G2131641 NA other downstream 418379 34516522 ~ 34518129 (-)
G2131621 NA other downstream 450332 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 868435 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 869843 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 1060260 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1078551 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1278984 36224213 ~ 36225379 (-)
G2132966 NA other upstream 1290286 36235515 ~ 36249775 (-)
G2133007 NA other upstream 1317773 36263002 ~ 36263330 (-)

Expression



Co-expression Network