Gene
RNA
| Item | Value |
|---|---|
| gene id | G2132287 |
| gene name | tnk2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 35682270 ~ 35685178 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tnk2 | Enables several functions, including epidermal growth factor receptor binding activity; protein kinase activity; and ubiquitin protein ligase binding activity. Involved in phosphorylation; positive regulation of peptidyl-tyrosine phosphorylation; and regulation of clathrin-dependent endocytosis. Located in several cellular components, including clathrin-coated pit; clathrin-coated vesicle; and cytoophidium. Part of Grb2-EGFR complex. |
| description |
|---|
| PREDICTED: activated CDC42 kinase 1 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2438120 | False | 578 | lncRNA | 0.48 | 3 | 35682270 | 35685178 |
| TU2438119 | True | 485 | lncRNA | 0.51 | 2 | 35682447 | 35685178 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509087 | LOC106588083 | coding | upstream | 297345 | 35372225 ~ 35384925 (+) |
| trnak-uuu-285 | NA | coding | upstream | 315334 | 35366864 ~ 35366936 (+) |
| trnak-uuu-284 | NA | coding | upstream | 316888 | 35365310 ~ 35365382 (+) |
| trnak-uuu-283 | NA | coding | upstream | 318447 | 35363751 ~ 35363823 (+) |
| trnak-uuu-282 | NA | coding | upstream | 320006 | 35362192 ~ 35362264 (+) |
| LOC110509092 | LOC106597187 | coding | downstream | 167372 | 35852550 ~ 35864073 (+) |
| LOC110508289 | LOC106597230 | coding | downstream | 288208 | 35973386 ~ 35975132 (+) |
| LOC110509094 | LOC106597143 | coding | downstream | 300337 | 35985515 ~ 35998946 (+) |
| riok1 | riok1 | coding | downstream | 343369 | 36028547 ~ 36039262 (+) |
| LOC110509101 | LOC106597086 | coding | downstream | 423448 | 36108626 ~ 36178080 (+) |
| G2132273 | NA | non-coding | upstream | 16840 | 35664365 ~ 35665430 (+) |
| G2132265 | NA | non-coding | upstream | 46403 | 35633644 ~ 35635867 (+) |
| G2132255 | NA | non-coding | upstream | 67614 | 35614088 ~ 35614656 (+) |
| G2132238 | NA | non-coding | upstream | 89777 | 35592132 ~ 35592493 (+) |
| G2132235 | NA | non-coding | upstream | 92868 | 35589192 ~ 35589402 (+) |
| G2132292 | NA | non-coding | downstream | 18635 | 35703813 ~ 35704307 (+) |
| G2132293 | LOC106596996 | non-coding | downstream | 20065 | 35705243 ~ 35705520 (+) |
| G2132294 | NA | non-coding | downstream | 21220 | 35706398 ~ 35706707 (+) |
| G2132296 | NA | non-coding | downstream | 24062 | 35709240 ~ 35709528 (+) |
| G2132298 | LOC106596996 | non-coding | downstream | 25483 | 35710661 ~ 35710942 (+) |
| G2131933 | NA | other | upstream | 589236 | 35091699 ~ 35093034 (+) |
| G2131426 | NA | other | upstream | 898852 | 34702206 ~ 34783418 (+) |
| G2131416 | NA | other | upstream | 994630 | 34687271 ~ 34687640 (+) |
| G2131383 | NA | other | upstream | 1077317 | 34603485 ~ 34604953 (+) |
| LOC110508236 | LOC106598267 | other | upstream | 1308260 | 34352592 ~ 34409491 (+) |
| G2132291 | NA | other | downstream | 14668 | 35699846 ~ 35700235 (+) |
| G2132519 | LOC100380659 | other | downstream | 653916 | 36339094 ~ 36364994 (+) |
| G2132611 | LOC100380659 | other | downstream | 680378 | 36365556 ~ 36369967 (+) |
| LOC110509112 | LOC106597339 | other | downstream | 837576 | 36522754 ~ 36528580 (+) |
