G2133005


Basic Information

Item Value
gene id G2133005
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36250376 ~ 36255942 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2438985
gctgccaccggagggctggtgcgtggagttggtactggatagaccggaccgtgcaggcgcactggagctcttgagcaccgagcctgcccaaccttacctgatTGAatactcccggtcgccctgccagtgcggcgaggtggaatagcccgcactgggctatgcagacgaaccggggacaccgtgcgcaaggctggtgccatgtaagccggcccaaggagacgcactggagaccagatgcgtagagccggcttcatgacacttggctcgatgcttactctagcccggccgatacgaggagctggtatgtaccgcactgGTCTATGCatccgcactggagacaccgtgtgctccacagcataacacggtgcctgcccggtctctctagccccccggtaagcacaggggagtctcctacctggcgtccctgtgtgcctcccccagtacatttttggggctgactctcgggcttccatccacgtcgccgtgctgcctcctcataccagcgcctctccgccttcgccgcctccagctcttctttggggcggcgatattctccaggctgagcccagggtcctttaccgtccagaaATCTGGATTAcgttgctcctgctgccgctgcctgtcaccacgccgcttggtcctgttgtggtgggtgattctgttacggttttctttctcctcttcctctgaagaggaggtgtagcagggatcggaccaaaatgcagcgtggttatttgtatacatctttaataaagatggaAACGTGAAAGGCTGTTTAggttatctggtgcaaacaaacacagagacaggaacaatcacccacaacactcagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccacatagactattctagacaaccccactaaccactatcccataacctacaacaaACCCCACCACataaaataacccatgtcacaccctggcctgatcaaaataataaggaaaacacaaaatactaagaccagggcgtgacaactagAGTGACTGAAGACTGTGGCGGATGCCCCGTTCTGTCCTCTGGAAGCTGGTACAGTAAGTGCTGCTGGTTGGTGGGGTGCTCCTGACTGCAGTGTGGAAGGGGCCTGAAGCACCACTCTGCAGTCATACTGTCCCAGGTCTGGTCAAGGATCACCCTCTCCATGAAGGACATGTACCTGTGTGATAAGTATAATTGTTTTCAGTAACATTGTCAACCAGGGAACTACATATAAAATGTACCACTGCGTCAAGGTCAACTTGTTGACCTCGAACAGTTGCAGCGTTGTGTGGATCTTCAGGTTTGGGCTGCCCAGCACCATGTTCCTGATTCTGTTGTTCCCCAGGATGGCAGCTCACCTGGTTCCCAAGCACAGTCTTGCCAGCAGGGTGTTTGTGGCACAGCTCAATGAAAATGGCCTCTACTGTCCAGGGCCACTGAGCAGGTCCAGAGCCTTGCCCAAGCAGGGAGCTAAATTAGATTGTTAATGAGAAATACACTCATGGCTTTGTGTGAAGTGAGTTATTGAGATTAGAACAATGTGCAGTACGTATCTCTTCCCCCTTCATGGTTGAGGTCTGAGTTTTTGAAGCTTCCCTGCAGGACTCGGTTCTGAAACCGCTCTTATATCCTTGCTTCatggcctgagctacaggcagttagatttgggtatgtcaattaagtgaaaattgaaaaaaaggggacTATCCCTAAgattaacgaccgttccacaggtgtatgttcgttaattgaacaagcatgggaatcAGTGTTTAACCTctgctagggggcactatttttatgtttggaaaaataacattcccaaagtaaacggcctatttctcaggaccagatgctagaatatgcatgtaattgacagattaggatagagaacactaaagtttctaactgtcaaaatattgtccgtgagtataacagaactgatattgcaatcaaaccaggaagtggcttctattttgaaaactccatgttccatagcctacctttgctccatttaaagggatatcaaccagattccttttcctatcgcttcttCAAGGTGTCAGGTcattagacatagtttcaggcttttatttttcaAAATGAGTGAGAGCATCTTGTCtttgtatggctgggtgccagccagagtttgggcagccattgccgttccctctcctactgaaaaagacagttgcggttgatattgattataaaaaaacgtttgacatgtttgtggacattacggatactatttggaatttgtctgcgttgtcgtgatcgctcattcctgtggatttctgaacaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2438985 True 2347 lncRNA 0.49 2 36250376 36255942

Neighbor

gene id symbol gene type direction distance location
LOC110509104 NA coding downstream 4395 36243661 ~ 36245981 (-)
LOC118936612 NA coding downstream 10037 36235498 ~ 36240339 (-)
LOC118944824 NA coding downstream 18216 36230055 ~ 36232160 (-)
fastk LOC106597078 coding downstream 31702 36192769 ~ 36218674 (-)
LOC110509100 LOC106597103 coding downstream 185804 36053418 ~ 36064572 (-)
LOC110508243 LOC100380659 coding upstream 83143 36339085 ~ 36391023 (-)
LOC118944889 LOC100380659 coding upstream 135332 36391274 ~ 36398759 (-)
faim2a LOC106597016 coding upstream 146627 36400409 ~ 36420016 (-)
abcf2a abcf2 coding upstream 169012 36424954 ~ 36437017 (-)
LOC110508244 LOC106597000 coding upstream 187281 36443223 ~ 36454287 (-)
G2132978 NA non-coding downstream 7191 36234468 ~ 36243185 (-)
G2132969 NA non-coding downstream 52944 36196849 ~ 36197432 (-)
G2132992 NA non-coding downstream 92088 36157228 ~ 36158288 (-)
G2132934 NA non-coding downstream 172673 36077476 ~ 36077703 (-)
G2132923 NA non-coding downstream 208550 36041534 ~ 36041826 (-)
G2133006 NA non-coding upstream 1795 36257737 ~ 36258004 (-)
G2133009 NA non-coding upstream 11302 36267244 ~ 36267598 (-)
G2133027 NA non-coding upstream 56827 36312769 ~ 36313075 (-)
G2133048 NA non-coding upstream 82366 36338308 ~ 36338554 (-)
G2133052 NA non-coding upstream 114602 36370544 ~ 36371153 (-)
G2132966 NA other downstream 601 36235515 ~ 36249775 (-)
G2132971 NA other downstream 24997 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 225175 36023714 ~ 36025735 (-)
lyrm4 lyrm4 other downstream 232544 36005489 ~ 36017873 (-)
G2131641 NA other downstream 1732247 34516522 ~ 34518129 (-)
G2133007 NA other upstream 7060 36263002 ~ 36263330 (-)
LOC110509111 LOC106597319 other upstream 300558 36526794 ~ 36557532 (-)
LOC110509127 LOC106596915 other upstream 1510776 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1872187 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 2263629 38519571 ~ 38526920 (-)

Expression


Co-expression Network