G2132519 (LOC100380659)


Basic Information

Item Value
gene id G2132519
gene name LOC100380659
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36339094 ~ 36364994 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2438402
ATCTCAAAGTGAGATGATGGCTCCAGCCCCTTTATTTCAGGAGGTCATGATTGGACAAATGATTTAAGACAAAGCAAAGAATCTACTCATATTCAATCAGAACAAAAAACTAATGGAGATGAGGGCTATACTGAATTCTCAACCAGATACAATTCTAATGTCGTGCATTTCACTAACAAGGCTGCAAATTAGACAAAATGGACCCATAGCGCCCACTGATCTAAAGTCAATGGTGTCAGGATATATTATCTTGGAAGAAACGCCAAATAACAAGTCTGAAGATTGCGaacctatttaaaaaaaaaaaacgaggtAAAAACGAGAGcataacataaaaaaatagaaaagttTGAATAGAATCTCAAAGTCAACTATATTTCCCCCAAAAATGAACATAAAAAAATATTCACTAAACTATTACTTTTAACAGTCAAGGAAAATCACATTCAAAGCAGTTTTTTTGCATGGAGGAAGGCATGATTCTTCATATTTACCATTTACATATGCATCTGGAGTGTCGGTGgtgcacatactgtactgtgcGATCACTTGTGCTATCACTTAATGGCTAATAACAAATCGTGTTTATGACAGGCTACTCCTGTTATCTATTCTAACATTTCCCTGATTGTTTATAGTAGCCATTTACATTCAAATGGACAGTTGATCAACTACGCCATCCATTCCTGTTGGTAAGTCACAGTGAATTTCCAGGTCTCTACAATCTGTGAGAGGAGTATCTTGTCTGGGAAGGAGGCCTCCACGTCAGGCAGGACTTCTACTCCTTTGCGGTCCATGTATCCAGCCAACGTCTCTTTGACACTCCAGTCTGGTTTGTAGGTGTCTGAGACATGTGGTTTCCCCAGATTCAGCAGGAGGAACTCGTGCATCTCCAGTAGCCAGGTGTCAACGTGACCCTTGGAGATGAATCCCTGGAGCAGcctcttctgttcctcctccAGGGGCTGCTGGTACTCTGTAGACACCCCAGAGAAAGGGTcCCTCTTCAGACTCTTCAGCATGTTCTCTGATTTGAGGGAAGACAGGAGCTGCCACAGAGCCACACCGTGCTTCAGACTGCACCTGCCCAGAGCCTTTAAGATGTGAGGATCCATCTGCTCGCCCATCTTCAGCATGTCCTCCAGGTAGCAGTCCAGGGGCATCTGGGAAACTCCCCCAGTCATGGACAGGAAGCCCAGAGCCAGCTCCACAGCCTTCAGGGCTTCACACACCTCACTGTACGACTGCAGATCCCTGGACAGGGCTGTGAGGGTCAGGGACGGCAGATGCTCCTGAGACACGTTTCCTTTCACCATTTTGAAAATGATGTCATAATCTCTCTCGTGTCTGGTGACCAGAGTGGGGATTCCAGTCAGTGTGATGAGAGGCTTGCCCTGCAGGAAACGGGTCAGAACCTGCTGCTGGATCTTGGGCAGGTCGTACTCAGACAGGGTCTCCTTGCCACGCTCCAGGCTGTACTGGCAGTTAGACAGCACCAGGGGCAGCAGGTCCTTCTCCAGTTCATAGCGGATCACATGCAGCTCTGTCAGCTCTGACAGGCTCACCTTGTAGCTGGTGTCTTCCCCAGTGTGGCGGTCCACAGAGTGCAGCAGCTCATTGTGAAGGGCCACCAGGTAGCTTAGCAGAGCCGTGGAACACAAGCCTGGACCCTGGCGCCGCGGCAGGAGGTACTGGAGGTCACTGTCCAGGTCCAAATCATCCTTCCAGAAGTCTTCTGGGATCTTTAtctcatTGGTGGCTACAGATACTCTGAGCAGGTTCCACGTGTTCAGAAATATCTGGACGTGCTTCTCATACCACACTCTCATTGGTCCTGACTGTCGTTGGATGAACTCTCTGATGGAGACATCCATCAGGTCTGATGAGTTCTGGAACTTTTTCACCAGACTCTTCTGTAGGGCCAGGATATGTGGAAGGAACTTGACCTGCCGGAACTCCGCCTCCTTCTGTAGGAACCTCCAGAGTAATGGCAGCTTGTCCTTTCCGTCATTCTGTTCTACGATGTGGGTGAGACTGAGTAGGGACACCCTCTCTCTGCAGCTCCAAACCCCTGAACAGTGGACCTGGGAGCCCTGAGACAGGGAGGACAACGGACACTCGTCCCCAAATGTCACCCTCATGACGAAGTTAGAGGAGACACGGGAGTCGTCTCTGATGGTGGCGTTCACCTCCCTCAGCTGCTGGTCAAGTTTCTTCAACTGAGGAGTGATGATGTCAGTAGCAACAGTTGTCTCCCAGGTATCTCTTGCCTCTTTAGTTGAGAGTTGGGGATCATTGCCAGCCGGCAATTGATTGGTCGGTGGTGGTTCCAGAATGGATCTGACTATCAGGTGGACGGTGGTGACCGTGTCATCATTTCCCTTCCCCAGGGCTTTGGTCAGCTGATCCATGTCTTTCAGCAGGTGACAAATCAGAAATTGGCAGGCGTCCTGGACTGGAGGCTGGATGATCTGCTGGATGGaCTGTGGCTGCTCTGAGGCCCCTCTCAGCATGGCCAGGTGGGTGAGCAGTCTGACCAGGATGAAGGGGGTGTGGGACATGTTTTTGgtgtccagggtgtctgggttgTCCCTCCTCTCAGGGTCTCCCAGGATGTGGCCAGTCCTTGTGAGATCTCCCTGCTGTAGCTCCATCTTCCGGAAACCAGTCAAGGGAACATGGTTCTCCCCTCCAATCTCCGCCTCACACTCTAGACATTTTGCCTTATGGGTGGGTTGACCACACTTATCCACAACACAGGGGTGACCATTCGGACAAGAGTACCAGGAGAGTCCATAATCCACTTTATTCGGTGTTATAAGCCTTTGAGCGACAGCCAGCATGTCCTCAGGCATTGTGGGTAGAAAGGCACTCAGCATATTGTTGGGAGACAGGCCAAGCTGCTGTAGAGGTGTGAGCAGCCCTTCTGTCCCAGTGAGCAGCACAGCAGACATGTGGACAGCCAGCTCTATAAGGGTGTGCTCCACACTGGACCGGTCTGCCAGGACACTCAGTCCTCCCATCCTGTTGTGAACCAATTCTTTGGCAAAGTCCCTCACTTCCCTGCGATGTAGGTACCTTGATCCCTCGATGAAGTCATCAAGTGCTTTGCATTGCTTaggggtggggtggaggcctgTGTTGGCTGCTCGGTACAGACTGGTGACTTCTCTGAAAAGAGCCAGCAGGATATACAAGGTCCGCCTCCTTGCAGGTGCAGTACATCTCTGACAGGTATCCTCAATCTCCTGCACACTGTCCTCTAGTACTGCTTTGGCAACAGCCTCGCGGATAACCTGGTAGTCGTCTCCATAGACGAGATACTGGTCCATCTGGCCAACATCTTCATTCTGTTGCTGCACCTCTTCAGGAAAAAGCCACCTGTACGTCTCTGTATCCCTCAGCATTCTCTGGACATACTCTACACCCTGCTGGCTGCTGATGTTGCGGATCAGGTACACCCTGTACCAGTCGTTCTTACTCTCCTTACACAGGCTCCTAACAGCACACAGGAACTCCTCGACCGCATCCTGACGATTTTCACATTCCCCAGACTGTGTGCTATGGAGCAAGTGTGCAGCCGTGTCCAGGCATAGACGGACCCTCGCGATCTGTTGCAGGTACTCTATTGTGACAGTCTCAGCCGACGCAGTGACAGAGTCCAGGAAGTGACTCAAGAACTCAGTCTCTTTCTGCAGGTAGGCCTGCTGGTCTGCAGGCTTCTGGCATTCATGTGGCTTTCTGTCGAACATGGAGTCCTCAAGGCAGTTGATGTAGAGCGCATAAAGTTCATTTTTATCCTCAGCCTCTAGAATGTTGCTCTCTTCTATCAATGTCAAATACTGCTGCAGATATTCTTTGACTTCATCAAAGGTGTACTTGAGCAGAAGCTTGAGTATCACTGATCGCACCACAGGATTCTTGTCCATAGACTCATCAAATGGTGAGAAATCTTTGGTGTGTATCTGACTTTGTGCTCTGATGAGTGGGATGGGTTCTGTCTCGACCATGAGGAAGGACAACAGGTGCAGGATGACACCTTTTGATGGGGGGATGTTGTCCTTGAAGCACACAGTAGTGACCAGGTCTATGAAAAACGCATTGCAACTCTGCCTGAACTGGGCGTTTAGGGTGATGCAAGCTCTTATGTCCTCAGACACTTTGACCTGGAAGTCATCTGGTAGTTCGTGTTTGCACATGGGGCAGTACATTTGGCCTGTGTTGAGACATCCTCTGACACAGGTCAGACAGAAGATGTGGTGACAGGGCAGATCCACCGGGTCTTGTGGTTCGCCCATGCACACACGGCACTGGAAACCAAACTTGCAAATCAGATCACTTGCTTTTTGCTTGCAAGTCTTCAGTATTGTAATGATGGCCGCAAATGGTTCCTCCGACTTTACGTCTGAGTTTTTTGCCAGAATTTTGCCTAAGGTATGAGTGTGATCAAGGACCAGAGACTTGAGCGCCCTCTCCTCAGACTCAAAGCCTAGCAGCATGTGTTCCACAAACAGAAAGACGATGCAGATACGGTTCCAATGATTACAGATGTAGTCAAACAGttcccggctcctctctccataCTGCTTCAGGCTTCTCTGGGAGCAGACCAGCTCCATAGACCCCTTCAGTCTTTTCACCTGCTTCAGCCAGTCCTGGCACTGGGCATCAGAGTCCAATGCAGGGGGTTCCAGGAGCTCAACACAGGCAACTGCTGCATAGACATCCAGAACCATCTCTGGGCTGTCCTTCATAAGTGGGATTCTCTGCAGGTGAGGAACCACCTGTGGTTGCAACGACATCATCCTGGTGAGGTTGTGCAGACGGGTACGGTACATGTTGTAGGCAGTGTGGACCAGGGGCAGGGAGGGAATCTCTTCACTTGGAGCTTTTCGTCGCCTCTGGAGCTCATTCACACAGCAGCTCAGGGCTTCACACAGGTGCTTTAACTCCGCCTCCGAAGCCACTTTCATCGTCATGGCAATGAAGTCCTGCAGGTACCTTTGGAAAAATTCCCTCTGCAGTTTCTCACCCAATGTAGCCAGATACTGACCAAGGGGGATTTTCTCAAAGAACACCTCGACACGTCCTCTGGTCTGCTGAGTTTGAATCAATAGTTCGTCCAGGATATCTCTGATCCTCCAGCTAAAGGGCATTGTGCAGCACATGGTCCTCTCAGCTGTGACATGGCTCTGCACCAGGATGGTCTTAGACTCAGAATTGAGATCAAAGTTAGGAATATCAAGCATCTCGTTACTGCCGAATATCTTCAGCCACAGGTTTCGGACTTCCTCCCCACTGTTGCTGTCCAGCAGGAGGTCAAGATTACGGTCCCGGTCGATGACTGAGACCAACTGGGCCAAGAGGGGTGTGACCACTGCTTGGATTCTCTTCCATAGAGTTTGTGTGAAGGTTCCCCCCTCCTGAAGAGCATCGATGTTGGATGCCTCCGTTAACACCCAGAACTTGGGGGAAGGGATATTTCGCTCACGGTTCTCCAGTAGAGTGTGAAGGCGGCTTCTCAGGGTTGTCAGGAACGTAGCTTTCAGGTCCTCGCTATCGTCCAGAAGTGTCAGCAGGATCTCGACCCTCCTGGTGCTGAGAGCTCCACTGTCCTCCTGATCTCTGAGCATGCTCACTGCACTCTGCACACAGCTTCGCATCAGATCTCTGGCATCAAACTCAGCCTAAAACAACAACATGCTCACATGAATAACACACAACTGACCTTGTTAGGTTTACAGAAACCAGAAGCACATGCATATTATAATTAAGAACTGCAATACAAACTTGTATACAATATGTAGTATACAATACTTACAGAGTGCTCTACCCCATGTGCCTCGATGTATGTGTCATCTGTTTGCATTGCTGGAACAAGAAAGAAAACTATGAAAAAACGAATTATCTAGGATTATTTACAGTCAATTCCCAACTATGGCATTTGTGCTACTGTGCATAATAACAGTTGGtaaagcatggcacttgcaatgaaAGGGTCATGGGTTCACTTCCCACTGGGGCTgcccataaa

Function

NR:

description
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase rnf213-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2438402 True 6034 TUCP 0.50 35 36339094 36364994

Neighbor

gene id symbol gene type direction distance location
afg3l2 afg3l2 coding upstream 1615 36313732 ~ 36337479 (+)
LOC118944825 NA coding upstream 87359 36230059 ~ 36255133 (+)
ubtfl ubf1 coding upstream 141656 36178766 ~ 36197438 (+)
LOC110509101 LOC106597086 coding upstream 161014 36108626 ~ 36178080 (+)
riok1 riok1 coding upstream 299832 36028547 ~ 36039262 (+)
zgc:136930 LOC106597301 coding downstream 109138 36474132 ~ 36481583 (+)
LOC110509110 LOC106597311 coding downstream 126495 36491489 ~ 36495849 (+)
LOC110509112 LOC106597339 coding downstream 157899 36522754 ~ 36528580 (+)
LOC110509114 LOC106597346 coding downstream 204672 36569666 ~ 36576319 (+)
dsela LOC106597370 coding downstream 231105 36596099 ~ 36602659 (+)
G2132578 NA non-coding upstream 76593 36262281 ~ 36262501 (+)
G2132531 NA non-coding upstream 77789 36260059 ~ 36261305 (+)
G2132577 NA non-coding upstream 79589 36258778 ~ 36259505 (+)
G2132576 NA non-coding upstream 80850 36257804 ~ 36258244 (+)
G2132523 LOC100380659 non-coding downstream 9360 36374354 ~ 36375612 (+)
G2132613 NA non-coding downstream 10906 36375900 ~ 36376608 (+)
G2132614 LOC100380659 non-coding downstream 11674 36376668 ~ 36376991 (+)
G2132615 LOC100380659 non-coding downstream 12568 36377562 ~ 36378174 (+)
G2132616 NA non-coding downstream 14073 36379067 ~ 36379295 (+)
LOC110508289 LOC106597230 other upstream 363962 35973386 ~ 35975132 (+)
G2132291 NA other upstream 638859 35699846 ~ 35700235 (+)
G2131933 NA other upstream 1246060 35091699 ~ 35093034 (+)
G2131426 NA other upstream 1555676 34702206 ~ 34783418 (+)
G2131416 NA other upstream 1651454 34687271 ~ 34687640 (+)
G2132611 LOC100380659 other downstream 562 36365556 ~ 36369967 (+)
G2133551 NA other downstream 673659 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1604109 37969103 ~ 37969465 (+)
G2134434 NA other downstream 1758402 38123396 ~ 38143819 (+)

Expression


Co-expression Network