G2132615 (LOC100380659)


Basic Information

Item Value
gene id G2132615
gene name LOC100380659
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36377562 ~ 36378174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2438503
TCTAGCAGTGTCTGTAGTACTTTGAAGTCCCCTTGAGGACAGATAGTCTCTCTGACATCCATAATGATCTTGGCCGATTTCAATGCTAGATGAAGGTCATGGTATTGTTGGATTTGCTGGACTCTGCTCTTGATCCATCTTCCATCATCAGCTGAGTTGATCCTGCACATTATTTTCAGATCTTTTTCCATGTCTTTGTACTTGTCTTTGTAGGCTTCAAAGATACTATCCACCTCCTCCAATGATATCGTACCAGATCTCAAACTGTCATAGATGCTCCTGTATTTATCGTTGCAACTCTGGAATATTTCGCTGTGGATCAGATCGAGAGTGTAcacttctgtctccctctcaggCTTTGGTTCTGTCTCATCTGTGTCAAGTTGGTTTTGTGAAAGCTCTTTGGCTTGGTTCTCCCAACACATAGTGAAAATGTAGCTGTCCCTGATAGCACGTAGGCTAGATGCCATCTGCCTGGTGTCATCACACAGGTTGAAGTATGTGACCACCCCAGTTACATTAGAGGAGTCATGGTCAAGTCTGTGAACTTCCATGAAATCATCCAGCGTCATCTGATCTATGTTCTCTTGGTTTTTGCGCTGCAGCTCTCTCA

Function

NR:

description
E3 ubiquitin-protein ligase rnf213-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2438503 True 613 lncRNA 0.44 1 36377562 36378174

Neighbor

gene id symbol gene type direction distance location
afg3l2 afg3l2 coding upstream 40083 36313732 ~ 36337479 (+)
LOC118944825 NA coding upstream 125827 36230059 ~ 36255133 (+)
ubtfl ubf1 coding upstream 180124 36178766 ~ 36197438 (+)
LOC110509101 LOC106597086 coding upstream 199482 36108626 ~ 36178080 (+)
riok1 riok1 coding upstream 338300 36028547 ~ 36039262 (+)
zgc:136930 LOC106597301 coding downstream 95958 36474132 ~ 36481583 (+)
LOC110509110 LOC106597311 coding downstream 113315 36491489 ~ 36495849 (+)
LOC110509112 LOC106597339 coding downstream 144719 36522754 ~ 36528580 (+)
LOC110509114 LOC106597346 coding downstream 191492 36569666 ~ 36576319 (+)
dsela LOC106597370 coding downstream 217925 36596099 ~ 36602659 (+)
G2132614 LOC100380659 non-coding upstream 571 36376668 ~ 36376991 (+)
G2132613 NA non-coding upstream 954 36375900 ~ 36376608 (+)
G2132523 LOC100380659 non-coding upstream 1950 36374354 ~ 36375612 (+)
G2132578 NA non-coding upstream 115061 36262281 ~ 36262501 (+)
G2132616 NA non-coding downstream 893 36379067 ~ 36379295 (+)
G2132617 NA non-coding downstream 1772 36379946 ~ 36380722 (+)
G2132618 NA non-coding downstream 2981 36381155 ~ 36381693 (+)
G2132619 NA non-coding downstream 3977 36382151 ~ 36382524 (+)
G2132621 NA non-coding downstream 7183 36385357 ~ 36385629 (+)
G2132611 LOC100380659 other upstream 7595 36365556 ~ 36369967 (+)
G2132519 LOC100380659 other upstream 12568 36339094 ~ 36364994 (+)
LOC110508289 LOC106597230 other upstream 402430 35973386 ~ 35975132 (+)
G2132291 NA other upstream 677327 35699846 ~ 35700235 (+)
G2131933 NA other upstream 1284528 35091699 ~ 35093034 (+)
G2133551 NA other downstream 660479 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1590929 37969103 ~ 37969465 (+)
G2134434 NA other downstream 1745222 38123396 ~ 38143819 (+)
LOC110508247 LOC106596897 other downstream 2147501 38292386 ~ 38526926 (+)

Expression


Co-expression Network