XLOC_004021 (zgc:174353)


Basic Information

Item Value
gene id XLOC_004021
gene name zgc:174353
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12703887 ~ 12705754 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007666
GTCATTGGCATCTGATCTCGGCGTCCTTCGTTGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGTTATCACactgtgttttgtgtttagtATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCACtatcctcctcttcctcagctgGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGTTCCCCATCTTCACCAGAGACGCACGGCGACCAGAAAAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGTCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007667
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAACGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctTCGCAAAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174353 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-121 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000077475

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007666 False 984 mRNA 0.50 6 12703887 12705754
TCONS_00007667 True 525 mRNA 0.52 5 12704296 12705608

Neighbor

gene id symbol gene type direction distance location
XLOC_004018 zgc:91850 coding downstream 13348 12688642 ~ 12690539 (-)
XLOC_004017 CR450764.14 coding downstream 30250 12672330 ~ 12673637 (-)
XLOC_004016 CR450764.3 coding downstream 69870 12632395 ~ 12634017 (-)
XLOC_004014 CR450764.17 coding downstream 84098 12610576 ~ 12619789 (-)
XLOC_004012 zgc:91850 coding downstream 113939 12588634 ~ 12589948 (-)
XLOC_004022 si:ch211-209f22.3 coding upstream 9310 12715064 ~ 12717004 (-)
XLOC_004023 zrsr2 coding upstream 26493 12732247 ~ 12744082 (-)
XLOC_004024 CR450764.5 coding upstream 50389 12756143 ~ 12756275 (-)
XLOC_004025 txlng coding upstream 76542 12782296 ~ 12802123 (-)
XLOC_004026 chrna4b coding upstream 276506 12982260 ~ 12998400 (-)
XLOC_004019 CR450764.8 misc downstream 12196 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 82120 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 112591 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 190625 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 203625 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 3421628 16127382 ~ 16127678 (-)
XLOC_003997 NA non-coding downstream 212608 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding downstream 238478 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding downstream 239401 12463700 ~ 12464486 (-)
XLOC_003977 NA non-coding downstream 490456 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 517743 12185854 ~ 12186144 (-)
XLOC_004029 BX530062.1 non-coding upstream 776917 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1092699 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1441909 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1603143 14308897 ~ 14311237 (-)

Expression


Co-expression Network