G2133192


Basic Information

Item Value
gene id G2133192
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36685227 ~ 36687547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2439184
GTTTATCTCATTCTGTCaattttacttctgtaaagacgAGACTGTCtactgaagagcctatttgaactgTTATTCAAGGaatacatattctgagcacttgaatcaaaggacaagtctatGCATTAAGCACTTCATCAATATCAAGTCACCAATGCTATTTTacaaataaagactggtttgtcaaTGCGATGCAAGCAGTTCTAAAAACTGTACAGGGAGACAACACTGGAGTTCATTTGCAAAGCTTAAACCACTTGGCCATCGCAGCAGTAGGAATCTAAggaaagtgatgaggagaaaGCAGAAGTGGGCTATACGCTTCGAGCAAGGTAAGAACATGGGTGGGGAGACCCCAGTGAAATTCAGGTCCAACGTCTAAAGAATCGGCCATTGCAGCTGTTGGAACAGTTATAGGGATTGGGGATTTGGAAACAGACATCATTGGTGTAAAATGGTAAACTTGATGGCACGACATATTGATCTTATTGCGCCAAATCACGTattaaccactcggccatcacAACTTTCTCAATTAGCTcacacaaagacaaagacaaaaagtATTCCGAGCACTTGAATCACTGGACAAGTCCATGTCTTAGATTCCTATCAAGTCATATGTTCAAAATACTGGTTTGTCATAGCGAGCAGATTTCAACCCTGCGCAGGAAGAcaacattggatttcaagtccactCCGCCATCAAAACTTACTCTGTTATCTTGCAGTCCTTAACAGCTCGACTATCTCACAACCAACAGGATCTGTTCTGAAGAGCCTATTCATTTTTGTCTTGGAAGATATATTCTGAGCACCTGAATGAAAGGACAAGTCCACGGATTAAGGACATTATCCATATCAACTCCCAAATGACATGTTGCAAATGAAGACTTGTTTGTCaaagcgctgtgagcagggttcgaacctgcgcggggagaccccattggatttcgaatccaacgccttaacctctcGGCCATCACAGCTTCTCCTGTTGGCTACTCTGCCTTAACCAGCCCGCTATCTCGTTCTGTCCATTTTACCTCTAAAATGACCATATTATCGCTATTGAAGAGCCTACTTTAAATGTTTGTCATGGAAGAtaaattctgagcacttgaatcaaaggacatgtccaagcattatccatatcaagtccccAATGATCAGTAACAAATAAAGACTGGATTGTTCAAAACTGCACTGGGCGAACCCAATGGATTTCGAGGTCAACGATTTAACCAGTCTGCAATCACAGCTTGCTGAGTTAGCTCACACAAGGACAAAAGTATCCAAATGCCTAGTTGAAATATTTTTCAAGTCAAATAAGCTATTTTCTGAGCACTTCAATCGTTAGACGAGCCCATAAAGTAAGGACAATTTAAATTCAGAGGAGACAGATCCAATTACTAAAGGTCTACTTTATCATCACCCTGTAAAAACTGTACAGGGAGAACATATTGGATTTTGATTCCAATGCTTAAACCACTTGGCCATCGCAGCAGTAGGAATCTAAggaaagtgatgaggagaaaGCAGAAGTGGGCTATACGCTTCGAGCAAGGTGAGAACATgggtggggagaccccattgAAATTCAGGTCCAACGTCTAAAGAACTCGGCCATTGCAGCTATTGGAATGCAAGTAAAGGGATTGAGATTTGGAAACAGACATCATTGGTGCAAAATGGTCAACTTGATGGCACGACATATTGATCTAGTAACCTCGGTCCTTTCCAAAGCTGTGAAGGTTGGAAGTTTAATGTGCAAGTCAAAAAACTATGTGCAGAGAAAGTACAAGTGGACTATTCACTGAGAATAAGATTTTAAAAAGAGCAGGGAGACGCAATTGGGTTTCAAGTTTGAAGACTTAACCACTTGGCTCTCAGATTTTCCATCGCAAATCTAACACAAACAACAGTATCTGtactgaagagcctatttgaactgtttgtcaaggcagatatattctgagcacttgaatcaaagtcGTTTATCTCATTCTGTCaattttacttctgtaaagacgAGACTGTCtactgaagagcctatttgaactgTTATTCAAGGaatacatattctgagcacttgaatcaaaggacaagtctatGCATTAAGCATTTCATCAATATCAAGTCACCAATGCTATTTTacaaataaagactggtttgtcaaTGCGATGCAAGCAGTTTTAAAAACTGTACAGGGAGACAACACTGGAGTTCATTTGCAAAGCTTAAACCACTTGGCCATCGCAGCAATAGGAATCTAAGGAAAGTGAAAGCAGAAGTGGGCTATACGCTTCGAGCAAGGTAAGAAC

Function

NR:

description
hypothetical protein EH28_21818

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2439184 True 2321 lncRNA 0.41 1 36685227 36687547

Neighbor

gene id symbol gene type direction distance location
LOC110509111 LOC106597319 coding downstream 127695 36526794 ~ 36557532 (-)
LOC110508244 LOC106597000 coding downstream 230940 36443223 ~ 36454287 (-)
abcf2a abcf2 coding downstream 248210 36424954 ~ 36437017 (-)
faim2a LOC106597016 coding downstream 265211 36400409 ~ 36420016 (-)
LOC118944889 LOC100380659 coding downstream 286468 36391274 ~ 36398759 (-)
LOC110509116 LOC106597376 coding upstream 110898 36798445 ~ 36958711 (-)
LOC118944834 NA coding upstream 312976 37000523 ~ 37001147 (-)
impa1 impa1 coding upstream 627064 37314611 ~ 37333488 (-)
fbxl7 fbxl7 coding upstream 649978 37337525 ~ 37470844 (-)
LOC110509120 mplkip coding upstream 783909 37471456 ~ 37473548 (-)
G2133165 NA non-coding downstream 29831 36655169 ~ 36655396 (-)
G2133150 NA non-coding downstream 55424 36629577 ~ 36629803 (-)
G2133144 NA non-coding downstream 61668 36623184 ~ 36623559 (-)
G2133135 NA non-coding downstream 73395 36611576 ~ 36611832 (-)
G2133134 NA non-coding downstream 75879 36609132 ~ 36609348 (-)
G2133224 NA non-coding upstream 29229 36716776 ~ 36716985 (-)
G2133230 NA non-coding upstream 34768 36722315 ~ 36722568 (-)
G2133359 NA non-coding upstream 43631 36731178 ~ 36731424 (-)
G2133361 NA non-coding upstream 44994 36732541 ~ 36732785 (-)
G2133368 NA non-coding upstream 53680 36741227 ~ 36741571 (-)
G2133007 NA other downstream 421897 36263002 ~ 36263330 (-)
G2132966 NA other downstream 435452 36235515 ~ 36249775 (-)
G2132971 NA other downstream 459848 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 660026 36023714 ~ 36025735 (-)
LOC110509127 LOC106596915 other upstream 1079171 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1440582 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 1832024 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2317914 39005461 ~ 39006050 (-)
LOC110509145 ankrd12 other upstream 3116248 39778552 ~ 39829207 (-)

Expression


Co-expression Network