G2133299 (LOC106597376)


Basic Information

Item Value
gene id G2133299
gene name LOC106597376
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36862134 ~ 36862412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2439294
CGATGATGAATCCTGGCCACAACCCTACCTGATGGGACTGTTGGTGGAGTCTGGGTCGTGTGCGAAGATGGTCCCGATGGTGGTGCCTACCGTTGCCTCCTCCGAGATTACCATCTTGCTGAACGGCGAGGAGAAGACGGGCGGCTCGTCCACGTTCTGCACGTTGAGGCGCACTGTCGCTGTGTCGCTAAACGGCCCCAGGGACAGGAATCGCAGGTCGATGTTTCTATTGGACGCCTCGACACGCAGGGTGTAGCTCGACTTGGTCTCAAAGTCCAG

Function

NR:

description
cadherin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2439294 True 279 lncRNA 0.59 1 36862134 36862412

Neighbor

gene id symbol gene type direction distance location
trnas-cga-50 NA coding upstream 174314 36687739 ~ 36687820 (+)
trnas-uga-130 NA coding upstream 174473 36687580 ~ 36687661 (+)
trnas-cga-49 NA coding upstream 175491 36686562 ~ 36686643 (+)
trnas-cga-48 NA coding upstream 177085 36684968 ~ 36685049 (+)
trnas-cga-47 NA coding upstream 178673 36683380 ~ 36683461 (+)
LOC118944833 NA coding downstream 114762 36977174 ~ 36982260 (+)
c28h7orf25 cssa03h7orf25 coding downstream 575620 37438032 ~ 37442898 (+)
LOC110509119 rala coding downstream 585327 37447739 ~ 37470801 (+)
LOC110509126 LOC106596905 coding downstream 763086 37625498 ~ 37650985 (+)
LOC110509125 LOC106596905 coding downstream 812406 37674818 ~ 37694631 (+)
G2133298 NA non-coding upstream 1060 36860834 ~ 36861074 (+)
G2133297 NA non-coding upstream 1387 36860318 ~ 36860747 (+)
G2133293 NA non-coding upstream 11537 36850224 ~ 36850597 (+)
G2133291 NA non-coding upstream 14403 36847370 ~ 36847731 (+)
G2133290 NA non-coding upstream 16038 36845895 ~ 36846096 (+)
G2133305 NA non-coding downstream 11501 36873913 ~ 36874376 (+)
G2133306 NA non-coding downstream 12870 36875282 ~ 36875643 (+)
G2133308 NA non-coding downstream 17173 36879585 ~ 36879941 (+)
G2133310 NA non-coding downstream 18735 36881147 ~ 36881439 (+)
G2133315 NA non-coding downstream 24022 36886434 ~ 36886825 (+)
LOC110509112 LOC106597339 other upstream 336719 36522754 ~ 36528580 (+)
G2132611 LOC100380659 other upstream 492167 36365556 ~ 36369967 (+)
G2132519 LOC100380659 other upstream 497140 36339094 ~ 36364994 (+)
LOC110508289 LOC106597230 other upstream 887002 35973386 ~ 35975132 (+)
G2132291 NA other upstream 1161899 35699846 ~ 35700235 (+)
G2133551 NA other downstream 176241 37038653 ~ 37038924 (+)
G2134356 NA other downstream 1106691 37969103 ~ 37969465 (+)
G2134434 NA other downstream 1260984 38123396 ~ 38143819 (+)
LOC110508247 LOC106596897 other downstream 1663263 38292386 ~ 38526926 (+)
LOC118944840 LOC106596771 other downstream 1927130 38789495 ~ 39333323 (+)

Expression


Co-expression Network