G2133445


Basic Information

Item Value
gene id G2133445
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 36894564 ~ 36900828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2439478
attctataatgtagaaaatagtcaaaataaagaaaaacccttgaatgagtaggtgtgtccaaactttagaccgATAGTGTACTGAACTGAGTGACATagcatcctatagggatagatcctgaaTTGAGGAACAGAGCATCCTATAGGGATAAATTCTGAACTGAGGAACAGGgcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctaaagggatagatcctgaactgagcaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaaaAGAGAAACATAGCATCCTAAcgggatagatcctgaactgaggaacatAGCATCCTATAGCgatagatcctgaactgaggaacagagaAACATAGCATCCTATAGGGATggatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggataatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgagaaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctATAGGTATAGATActgaactgaggaacagagaaacatagcatcctatagggatagatcctgaactgaggaatAGAGAAACATTGCATCTTAGAGGGATAAATCCTGAACTGAGGAATAGAGAAACATTgcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagaAACATAGCATCCTATAGggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctaaagggatagatcctgaactgagcaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacat
>TU2439473
attctataatgtagaaaatagtcaaaataaagaaaaacccttgaatgagtaggtgtgtccaaactttagaccgATAGTGTACTGAACTGAGTGACATagcatcctatagggatagatcctgaaTTGAGGAACAGAGCATCCTATAGGGATAAATTCTGAACTGAGGAACAGGgcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctaaagggatagatcctgaactgagcaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaaaAGAGAAACATAGCATCCTAAcgggatagatcctgaactgaggaacatAGCATCCTATAGCgatagatcctgaactgaggaacagagaAACATAGCATCCTATAGGGATggatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggataatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgagaaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctATAGGTATAGATActgaactgaggaacagagaaacatagcatcctatagggatagatcctgaactgaggaatAGAGAAACATTGCATCTTAGAGGGATAAATCCTGAACTGAGGAATAGAGAAACATTgcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagaAACATAGCATCCTATAGggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaacGGAGGAACATAGCatcctatagggatagatcctgaactgaggaatAGAGAAACATagcatcctatagggatagatcctgaactgaggaacagagaaacatagcatcctatagggatagatcctgaactgaggaacaaAGCATCctatagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacatagcatcctatagggatagatcctgaactgaggaatAGAGAAACATagcatcctatagggatagatcctgaactgaggaacagagaaacatagcatcctatagggatagatcctgTACTGAGGAACAAagcatcctatagggatagatcctgaactgaggaacagagcatcctatagggatatatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaacagagcatcctgtagggatagatcctgaactgaggaacagagcatcctatagggatagatcctgaactgaggaatAGAGAAACAGagcatcctatagggatagatcctgaactgaggaac

Function

NR:

description
egg envelope protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2439478 False 1180 lncRNA 0.43 2 36894564 36900828
TU2439473 True 1514 lncRNA 0.43 4 36896507 36900828

Neighbor

gene id symbol gene type direction distance location
LOC110509111 LOC106597319 coding downstream 337032 36526794 ~ 36557532 (-)
LOC110508244 LOC106597000 coding downstream 440277 36443223 ~ 36454287 (-)
abcf2a abcf2 coding downstream 457547 36424954 ~ 36437017 (-)
faim2a LOC106597016 coding downstream 474548 36400409 ~ 36420016 (-)
LOC118944889 LOC100380659 coding downstream 495805 36391274 ~ 36398759 (-)
LOC118944834 NA coding upstream 99695 37000523 ~ 37001147 (-)
impa1 impa1 coding upstream 413783 37314611 ~ 37333488 (-)
fbxl7 fbxl7 coding upstream 436697 37337525 ~ 37470844 (-)
LOC110509120 mplkip coding upstream 570628 37471456 ~ 37473548 (-)
inhbab inhba coding upstream 645984 37546812 ~ 37561210 (-)
G2133441 NA non-coding downstream 6046 36888290 ~ 36888518 (-)
G2133435 NA non-coding downstream 14621 36879581 ~ 36879943 (-)
G2133434 NA non-coding downstream 16530 36877822 ~ 36878034 (-)
G2133433 NA non-coding downstream 17036 36877263 ~ 36877528 (-)
G2133429 NA non-coding downstream 26984 36867279 ~ 36867580 (-)
G2133452 NA non-coding upstream 8475 36909303 ~ 36909515 (-)
G2133453 NA non-coding upstream 8749 36909577 ~ 36909792 (-)
G2133459 NA non-coding upstream 19029 36919857 ~ 36920871 (-)
G2133481 NA non-coding upstream 63191 36964019 ~ 36964231 (-)
G2133483 NA non-coding upstream 64359 36965187 ~ 36965469 (-)
G2133007 NA other downstream 631234 36263002 ~ 36263330 (-)
G2132966 NA other downstream 644789 36235515 ~ 36249775 (-)
G2132971 NA other downstream 669185 36224213 ~ 36225379 (-)
LOC118944844 riok1 other downstream 869363 36023714 ~ 36025735 (-)
LOC110509127 LOC106596915 other upstream 865890 37766370 ~ 37996222 (-)
G2134625 NA other upstream 1227301 38128129 ~ 38130407 (-)
G2135034 LOC106596897 other upstream 1618743 38519571 ~ 38526920 (-)
G2135837 NA other upstream 2104633 39005461 ~ 39006050 (-)
LOC110509145 ankrd12 other upstream 2902967 39778552 ~ 39829207 (-)

Expression


Co-expression Network