XLOC_004022 (si:ch211-209f22.3)


Basic Information

Item Value
gene id XLOC_004022
gene name si:ch211-209f22.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12715064 ~ 12717004 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007668
GTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGACCCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCACCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCgctgccctcctcttcctcagcCGGTGCAGCATCTTCAGTCCAGGATGCCGGAGGGAAACGTTCCCGCTCCCCATCACCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA

Function

symbol description
si:ch211-209f22.3 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007668 True 984 mRNA 0.51 6 12715064 12717004

Neighbor

gene id symbol gene type direction distance location
XLOC_004021 zgc:174353 coding downstream 9310 12703887 ~ 12705754 (-)
XLOC_004018 zgc:91850 coding downstream 24525 12688642 ~ 12690539 (-)
XLOC_004017 CR450764.14 coding downstream 41427 12672330 ~ 12673637 (-)
XLOC_004016 CR450764.3 coding downstream 81047 12632395 ~ 12634017 (-)
XLOC_004014 CR450764.17 coding downstream 95275 12610576 ~ 12619789 (-)
XLOC_004023 zrsr2 coding upstream 15243 12732247 ~ 12744082 (-)
XLOC_004024 CR450764.5 coding upstream 39139 12756143 ~ 12756275 (-)
XLOC_004025 txlng coding upstream 65292 12782296 ~ 12802123 (-)
XLOC_004026 chrna4b coding upstream 265256 12982260 ~ 12998400 (-)
XLOC_004027 elovl1b coding upstream 377175 13094179 ~ 13152524 (-)
XLOC_004019 CR450764.8 misc downstream 23373 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 93297 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 123768 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 201802 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 214802 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 3410378 16127382 ~ 16127678 (-)
XLOC_003997 NA non-coding downstream 223785 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding downstream 249655 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding downstream 250578 12463700 ~ 12464486 (-)
XLOC_003977 NA non-coding downstream 501633 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 528920 12185854 ~ 12186144 (-)
XLOC_004029 BX530062.1 non-coding upstream 765667 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1081449 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1430659 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1591893 14308897 ~ 14311237 (-)

Expression


Co-expression Network