G2136008 (LOC106596709)



Basic Information


Item Value
gene id G2136008
gene name LOC106596709
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39378211 ~ 39378968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2442607
gaaccctttatggttccaggcagaaccctttatgcttccaggtagaacccttcttggttccaggtagaacccttcttGGTTCCTGTTAGAACCCCTTCTTTTTATCTTGCCACTGTAAATCAACACTACCTCTGGACTGCACGTAGTGGACCAGTCCGTTACTCGGCGAGTATTCCTTGGTCCGTGTGCTGTGGAGGTCGATGACCGCGGAGTAGATATCTCTAAGGTTGATGACTTTGGTCTTCTTGTCTCTGTTCTCGTGAAGCACGGCGTTTGCACAGATGAAGATAAATATGCCTATCCCCATGACTAAGGGCCCGAACACCTTCAGGTGGTCTGAGGACAGATAGTTGTCCAAGAACTCAGAGAGCAACCCACCTGAAGGATGGGAagaagatggaggggggagaaaaATGACTACCCCTTATTTAAGCAAGTTAGTCACTGAGAACACATTTTCTTTTACAATaatgacctgaccaagataagAGCGAGAGGATCTTTGCAAAGCAGACAGAATGAACAACACAATGAATGATTTGTCTTGTAAGTACAAATATCTTAGTAAAAAATAACCTACCTGAGGgtataggaggaggaggggtaaatACCGATACAAGTACACTACCATTACCAGATACAATAACCTACCTGAGGgtataggaggaggaggggtagataCCGATACAAGTACACTACCATTACCAGATACAATAACCTACCTGAGGgtataggaggaggaggggtagataCCGATA

Function


NR:

description
PREDICTED: uncharacterized protein LOC106596709 isoform X4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU2442607 True 758 lncRNA 0.45 1 39378211 39378968

Neighbor


gene id symbol gene type direction distance location
LOC118944870 LOC106596806 coding downstream 675603 38685275 ~ 38702608 (-)
LOC110509133 LOC106592421 coding downstream 704990 38657804 ~ 38673221 (-)
LOC110509132 LOC106596853 coding downstream 733461 38574717 ~ 38644750 (-)
LOC110509127 LOC106596915 coding downstream 1381989 37766370 ~ 37996222 (-)
LOC110509123 LOC106596905 coding downstream 1773331 37578708 ~ 37645494 (-)
LOC110509137 LOC105025287 coding upstream 199249 39577116 ~ 39621092 (-)
LOC118944811 NA coding upstream 200726 39579694 ~ 39582551 (-)
rab31 rab31 coding upstream 257495 39633741 ~ 39650366 (-)
LOC118944836 ralbp1 coding upstream 335660 39714554 ~ 39717684 (-)
LOC110509148 LOC106596679 coding upstream 340729 39719697 ~ 39763225 (-)
G2135995 NA non-coding downstream 31565 39332995 ~ 39346646 (-)
G2135992 NA non-coding downstream 45740 39331031 ~ 39332471 (-)
G2135991 NA non-coding downstream 50231 39327149 ~ 39327980 (-)
G2135954 NA non-coding downstream 125029 39252578 ~ 39253182 (-)
G2135878 NA non-coding downstream 276909 39100809 ~ 39101302 (-)
G2136009 NA non-coding upstream 222 39379190 ~ 39379395 (-)
G2136010 NA non-coding upstream 895 39379863 ~ 39380100 (-)
G2136011 LOC106596709 non-coding upstream 1416 39380384 ~ 39382268 (-)
G2136040 NA non-coding upstream 45238 39424206 ~ 39426743 (-)
G2136045 NA non-coding upstream 45996 39424964 ~ 39428092 (-)
G2135837 NA other downstream 372161 39005461 ~ 39006050 (-)
G2135034 LOC106596897 other downstream 851291 38519571 ~ 38526920 (-)
G2134625 NA other downstream 1247804 38128129 ~ 38130407 (-)
LOC110509111 LOC106597319 other downstream 2820758 36526794 ~ 36557532 (-)
LOC110509145 ankrd12 other upstream 424827 39778552 ~ 39829207 (-)
G2136189 NA other upstream 564185 39943153 ~ 39945834 (-)
LOC110508256 LOC106596607 other upstream 611595 39973367 ~ 40103148 (-)
G2136243 NA other upstream 672671 40051639 ~ 40121899 (-)
G2137086 NA other upstream 1036335 40415303 ~ 40415540 (-)

Expression



Co-expression Network