G2136042 (LOC106609167)


Basic Information

Item Value
gene id G2136042
gene name LOC106609167
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 39593857 ~ 39596743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2442654
CATCCTCTCAGCCGGTAGGGCTTCCTCTCAGCCGGTAGGGCATCCTCTCAGCCGGTAGGGCATCCTCTCAGCCGGTAGGGCATCCTCTCAGCCGGTAGGGCATCCTCTCAGCCGGTAGGGCATCCTCTCAGCCGGTAGGGCATCCTCTCAGCTGGTTGGCCATGAAGCTGGCAAACACCAGGATTGTAGGAGGCTAGTTCTCCAGGAGCAGGTTTGGAGAACCCTGTTCTAGAGGAACATACTGTAATGTTGTGCAACTTGCGCCCCAGTGTATGATCTATGACAGCGATCCTCAACTGGTGGGTTGTGAACCAAATGTGAGGTTTTGAATGAGTCGTGAGTCTGAGAAAATAAAAAGTAATTTGGGAACAACACTTAAGAGAATTTGTCAACAACATAgttggcaatagaagttacttaTAGATGTGTATTATTTTCATTTTAGATATAGTGTTGCTTAACCACATGACATagattttgagatatgaagaccTGTTATTATAAATGAAATGAAACCGTTCCAGTAAAATGTGCATATGGAAATCATAACCGGCAcacagatcagtagaaatggtactATAACTTGgtactccaaatggaaaaggttgccgaTCACTGGTGAAGCCTACTGAAGGCGCCATCAGCTTCATTggtgccggtgatgtctggtgaggacctgcctcacaacaggcctacaagcccttagtccagcctctctcagcctattgcggacagtctgagcactgatggagggattgtgcgttcctggtgtaactcggccagttgttgttgccatcctgtacctgtcccgcaggtgtgatgttcgaatgtaccgatcctgtgcaggtgttgttacatgtggtctgccactgcgaggacgatcagctgtccgtctggtctccctgtagcgctgtcttaggcgtctcacagtatatCATTTATTGCCaaggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcacgcagatgagcagggaccctgggcatctttctttttgtgtttttcagagtcggtagaaaggcctctttagtgtcctaagttttcataactgtgaccttaattgcctaccgtctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcattgggaaacagtgtttaaaccctttacaatgatgatctgtgaagttatttggatttctactaattatctttgaaagaccgggtcctgaaaaggggacgtttctttttttgctgagttgagtTGATTTCAGACCAGCTCAGTAGTCGACACACAGTTGATTTATTAACACACAggatgtgtctatatatggagaAATGCATGTTTTAACATTTTGACCGTCcgattggttgaaagaacagaCGAGACTTGGTCAAacgattatttattttttttgtggtgGGAGAGCTCTAGAACAGAGTGGCCCGTGGTGGCggttgggttatggtatgggcagacacaagctacggacaacgaacacgattgcattttatcgatggcaattttaaATGTACAGACAGATATACCATGACGAGATGTCGTGCcgttcatccgccgccatcacctcatgtttcagcatgataaatgcactgccccatgtcgcaaggatctgtacacaattcctggaagctgtcccagttattccatggcctgcatactcaccagacatgtcacccattgagcctgtttgggatgctctggattgacatctATGACAGCCTGGTCCAATTCTCCCCcccaatatccaacaacttcacacagccaatgAAGAGGAGTACAACAACATTCcttaggccacaatcaacagcctgatcaactctatgtgaaagagagttgatcaggctgttgacacaagatactgactggttctctgatccaTGCCCCGTACTTTTATTTGTATGTATGTGgccaacagatgcacatctgtattcccagtcatgtgaaatctatagattagggcctaatgaaggTAGAACGTGTAGAAATAATGAACCTGTATCTTTTAAATAATTTAACCTCTAAACTATTTTTCTGATCACAGTATTTGTAATAGTTATTAGCAGTACTATTTAGTCGATGTGGTTGATTTTTGTGGTCTCAAACCAGTGAGCTTCACATTCTTCAAGAATATGGGCACATTTGTATTAGTTACAGTGGAAAAGGTTGAACTGTTGTTCCCTTATCATATAATCTGTACATTTACTATCAATATAGCATTAAACAGTTATCCAGATTTGCATTTTGGCAACAGCCCAGCCCCAACAAAACCATATGAGATCCACAGGTGGTAGTTTCCCCTCTAGTCCAGTAGAGGGCAGCAACAGGTGTGGTAGTTTCCCCTCTAGTCCAGTAGAGGGCAGCAACAGGTGTGGTAGTTTCCCCTCTAGTCCAGTAGAGGGCAGCAACAGGTGTGGTAGTTTCCCCTCTAGTCCAGTAGAGGGCAGCAACAGGTGGGGTAGTTTCCCCTCTAGTCCAGTAGAGGGCAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC109630516

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2442654 True 2551 lncRNA 0.45 2 39593857 39596743

Neighbor

gene id symbol gene type direction distance location
LOC118944811 NA coding downstream 11306 39579694 ~ 39582551 (-)
LOC118944870 LOC106596806 coding downstream 891249 38685275 ~ 38702608 (-)
LOC110509133 LOC106592421 coding downstream 920636 38657804 ~ 38673221 (-)
LOC110509132 LOC106596853 coding downstream 949107 38574717 ~ 38644750 (-)
LOC110509127 LOC106596915 coding downstream 1597635 37766370 ~ 37996222 (-)
rab31 rab31 coding upstream 39720 39633741 ~ 39650366 (-)
LOC118944836 ralbp1 coding upstream 117885 39714554 ~ 39717684 (-)
LOC110509148 LOC106596679 coding upstream 122954 39719697 ~ 39763225 (-)
LOC110509145 ankrd12 coding upstream 181809 39778552 ~ 39829207 (-)
ndufv2 ndufv2 coding upstream 246568 39843311 ~ 39869936 (-)
LOC110509137 LOC105025287 non-coding downstream 14831 39577116 ~ 39621092 (-)
G2136094 NA non-coding downstream 21218 39572343 ~ 39572639 (-)
G2136091 NA non-coding downstream 23510 39569393 ~ 39570347 (-)
G2136079 NA non-coding downstream 47006 39526974 ~ 39546851 (-)
G2136075 NA non-coding downstream 76157 39517285 ~ 39517700 (-)
G2136097 NA non-coding upstream 25838 39622581 ~ 39622827 (-)
G2136028 NA non-coding upstream 26249 39622992 ~ 39625417 (-)
G2136035 NA non-coding upstream 29294 39626037 ~ 39626705 (-)
G2136098 NA non-coding upstream 31027 39627770 ~ 39628147 (-)
G2135837 NA other downstream 587807 39005461 ~ 39006050 (-)
G2135034 LOC106596897 other downstream 1066937 38519571 ~ 38526920 (-)
G2134625 NA other downstream 1463450 38128129 ~ 38130407 (-)
LOC110509111 LOC106597319 other downstream 3036404 36526794 ~ 36557532 (-)
G2136189 NA other upstream 346410 39943153 ~ 39945834 (-)
LOC110508256 LOC106596607 other upstream 393820 39973367 ~ 40103148 (-)
G2136243 NA other upstream 454896 40051639 ~ 40121899 (-)
G2137086 NA other upstream 818560 40415303 ~ 40415540 (-)

Expression


Co-expression Network