G2138287 (LOC106596129)


Basic Information

Item Value
gene id G2138287
gene name LOC106596129
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42339661 ~ 42341071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2445567
tgTGGTGAAGATACTCCAATATCCAGAGAATAAGTATTTAATTGACAACAGCAACCCAGGTCTGGTAAACCTCCAGACAGGATACATATGGTTCACAGCTAACAAATTAAAACCAGGTgcagatgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtctggtTACACCACAGCTGGCTTTATTACATCATTTTCAGTTTACAACAAATGCATTTCagtgtgatttgtgtgtgtgtttgagtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggtataGGTGTAGGTGTGTTGGATATATGTAACTAccgatctgtgtgtgtgtgtgtgtgtatgtgtgtgtgagagagatgtctAAATGACTGATCTAGAATAATAACAGATAAGAGACACTTTCACTGAAATTAAAAACTATAAAACTGTTTGAAAACATAACGACTTTGTAAGTCAAAGCCTTTTTAAACTTAAGACTGTTTGAAAAGTTAAGACTTTGAAAAGTTAAGACTGTTTGAAAAGTGAAGACTGTTTTGCGAGACATTGACACTGTGTGTAACTCCTTCCACTAGAATATCACATTTAGTGTAAAATACAAACGTACTGATATAGGCCTCACAGAGAGGGATCTCTTATAGAAAAACacaaaaatcaacaacaacaacaacaattgaCCTACAGCTGTAACATTGTACACATTCAATATCAGTAACTCTCTGATAAGAGAGGCTTGGTTGTTTGTGCTTATCTAGTTAATGGTGGAATCTGTCATTTAACTAATTTAAAAGATTCAACAATCTGGAGGCTCTTGTGTCTTTCGGACGAGCTAGAAGTTTAGCTTCCAAGTTTTGCCATTTTGCTAAAACCTGGAAAATCACAGAGCACCATATGACTTTAATTCAAAACCCAGAGAACACccttttgtttatttttcataACTGAAAAGATTCTTACGGACTACAGCTTTAACAGCTAGTTAGAACACAGCTGGTTAGCTCTAACGAGCTGGTTAGCTGCTTAGCTGGTTAGCTGGTTAGCAGACCCAGCGGATGAAGCGTTCAAGGAATGTGGGTTTCCCCAGCGTGGCGTAGTCCTCTCCTCTAAAGATGGCTGACGTGTCTCCCAGGGCAACCTTCCTCAACACTTCCTGGTCCGTGTCGGTCCCCATGGCGATCACCGTGGGAATGCCCTCGGCCCGTCGCATGGCTGAGACACCCTCCTCCAGGCTGTCGCCCGCGGTGATGCCGTCGGTGATAAAGACGAAGGACAGTTCAGCGTTACGACGTGCCAGGCGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2445567 True 1341 lncRNA 0.43 2 42339661 42341071

Neighbor

gene id symbol gene type direction distance location
LOC110508267 LOC106596213 coding downstream 202297 41906782 ~ 42137364 (-)
LOC110509166 LOC106596257 coding downstream 698495 41630582 ~ 41641166 (-)
znf414 znf414 coding downstream 712821 41587299 ~ 41626840 (-)
si:ch211-106k21.5 LOC106596230 coding downstream 770916 41551990 ~ 41568745 (-)
LOC118944899 NA coding downstream 805101 41534492 ~ 41534560 (-)
cfap410 cunh21orf2 coding upstream 19676 42360747 ~ 42368140 (-)
LOC118944818 NA coding upstream 28794 42369865 ~ 42370480 (-)
LOC110509173 NA coding upstream 59444 42400515 ~ 42410701 (-)
LOC110509174 them6 coding upstream 130820 42471891 ~ 42493837 (-)
them6 them6 coding upstream 157212 42498283 ~ 42508205 (-)
G2138313 NA non-coding downstream 14895 42324317 ~ 42324766 (-)
G2137877 NA non-coding downstream 51332 42288008 ~ 42288329 (-)
G2137874 NA non-coding downstream 53055 42286403 ~ 42286606 (-)
G2137873 NA non-coding downstream 55283 42284163 ~ 42284378 (-)
G2137868 NA non-coding downstream 61972 42277489 ~ 42277689 (-)
G2138286 NA non-coding upstream 27173 42368244 ~ 42385423 (-)
G2138348 NA non-coding upstream 90218 42431289 ~ 42431644 (-)
G2138358 NA non-coding upstream 119358 42460429 ~ 42461528 (-)
G2138366 NA non-coding upstream 134399 42475470 ~ 42475859 (-)
G2138367 NA non-coding upstream 135372 42476443 ~ 42477643 (-)
G2137814 LOC106597294 other downstream 112696 42220922 ~ 42226965 (-)
G2137648 LOC106596196 other downstream 525460 41810795 ~ 41814201 (-)
G2137555 NA other downstream 603272 41731714 ~ 41736389 (-)
G2137419 NA other downstream 1078390 41260800 ~ 41261271 (-)
G2138294 LOC106594920 other upstream 8145 42349216 ~ 42351452 (-)
emilin2a LOC106595984 other upstream 1033676 43343531 ~ 43398034 (-)

Expression


Co-expression Network