G2138286


Basic Information

Item Value
gene id G2138286
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 42368244 ~ 42385423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2445563
GAGACTCAGGCGTTCCTCTCTTGACTGCTTTTTATTGTGGTGGATGTTTGATGAGGCAGCGTCCAGCTCAGGATAAACAACACAACAGTCTGGTCCCTCCAAGTAACCCTCTACTGGTCCTTCAGctccttcagtctcctgatggcCGACTTCACTGTGACTGCAGACGTCGTTGTATGTCCAGGCACCTCCAGCAACAGTCTTCATGCAGGACCCGCAGTGCCAGATACCAACAGCCCTCCTCTTCATCTTAGTCTGAAGATTAAAAACAATTAAGTGCTGTGATTAACCTCCGCATTGTTATAACACATCACCGCACCTCGGTGTGGACCGCACCTCGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGCACCTTGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGCACCTTGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGTACCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGCTGATCTCAATCTTCTTCACCATCTTCCTGAGCGACGCGCCGTAACGCGTGCCATATTTACCCACAATCCCCACCTTCTTGGTGCGCTTAGCCTGAGGAAGACCATTGTTGCTGAGGAGACGTCGGTCCAAAGAGGAAGAGCTGAGGTCGCAGGCGCACTTTACCCCTGTGGAACGTGTTGCATTGTGGGATGTCGGCGCTGTCCTGGGCCTGTAGACACTGCCAAAATAAATGCAAAATTGTTTCTGGATGCTCAACACAAAAAGTAcagtttgtaaaaaataaaatccctTGTGAAAGTCAGGGTATGATGTCGCGTTCAGGACGCTCCGACTCGCGCATCGTGTTTAACCTCTAACAAGGCAGACATGTTCGAGTTTCCTCGATCCGACTGGCACGTCGACAAAACCTCACTGTTTTCCTCAAAAGTACGTACATGTCACGATTACAAAACGATACGAGATTACAGAGAACAATTTAATTATCTCACATcacg
>TU2445565
GAGACTCAGGCGTTCCTCTCTTGACTGCTTTTTATTGTGGTGGATGTTTGATGAGGCAGCGTCCAGCTCAGGATAAACAACACAACAGTCTGGTCCCTCCAAGTAACCCTCTACTGGTCCTTCAGctccttcagtctcctgatggcCGACTTCACTGTGACTGCAGACGTCGTTGTATGTCCAGGCACCTCCAGCAACAGTCTTCATGCAGGACCCGCAGTGCCAGATACCAACAGCCCTCCTCTTCATCTTAGTCTGAAGATTAAAAACAATTAAGTGCTGTGATTAACCTCCGCATTGTTATAACACATCACCGCACCTCGGTGTGGACCGCACCTCGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGCACCTTGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGCACCTTGGTGTACCTGGCTGTATATGTTAGAGGTGTGGACCGTACCTTGCCACAGAAGGAGCAGGTGTACTTGGCGTGCTGGCTGATCTCAATCTTCTTCACCATCTTCCTGAGCGACGCGCCGTAACGCGTGCCATATTTACCCACAATCCCCACCTTCTTGGTGCGCTTAGCCTGAGGAAGACCATTGTTGCTGAGGAGACGTCGGTCCAAAGAGGAAGAGCTGAGGTCGCAGGCGCACTTTACCCCTGTGGAACGTGTTGCATTGTGGGATGTCGGCGCTGTCCTGGGCCTTTTGTAGACACTGCCAAAATAAATGCAAAATTGTTTCTGGATGCTCAACACAAAAAGTAcagtttgtaaaaaataaaatccctTGTGAAAGTCAGGGTATGATGTCGCGTTCAGGACGCTCCGACTCGCGCATCGTGTTTAACCTCTAACAAGGCAGACATGTTCGAGTTTCCTCGATCCGACTGGCACGTCGACAAAACCTCACTGTTTTCCTCAAAAGTACGTACATGTCACGATTACAAAACGATACGAGATTACAGAGAACAATTTAATTATCTCACATcacg

Function

NR:

description
PREDICTED: 60S ribosomal protein L37a isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2445563 False 995 lncRNA 0.50 5 42368244 42385423
TU2445565 True 998 lncRNA 0.49 5 42368244 42385423

Neighbor

gene id symbol gene type direction distance location
cfap410 cunh21orf2 coding downstream 104 42360747 ~ 42368140 (-)
LOC110508267 LOC106596213 coding downstream 230880 41906782 ~ 42137364 (-)
LOC110509166 LOC106596257 coding downstream 727078 41630582 ~ 41641166 (-)
znf414 znf414 coding downstream 741404 41587299 ~ 41626840 (-)
si:ch211-106k21.5 LOC106596230 coding downstream 799499 41551990 ~ 41568745 (-)
LOC110509173 NA coding upstream 15092 42400515 ~ 42410701 (-)
LOC110509174 them6 coding upstream 86468 42471891 ~ 42493837 (-)
them6 them6 coding upstream 112860 42498283 ~ 42508205 (-)
LOC110508271 NA coding upstream 244722 42625607 ~ 42703120 (-)
LOC110509177 LOC106597278 coding upstream 348220 42733643 ~ 42772837 (-)
G2138287 LOC106596129 non-coding downstream 27173 42339661 ~ 42341071 (-)
G2138313 NA non-coding downstream 43478 42324317 ~ 42324766 (-)
G2137877 NA non-coding downstream 79915 42288008 ~ 42288329 (-)
G2137874 NA non-coding downstream 81638 42286403 ~ 42286606 (-)
G2137873 NA non-coding downstream 83866 42284163 ~ 42284378 (-)
G2138348 NA non-coding upstream 45866 42431289 ~ 42431644 (-)
G2138358 NA non-coding upstream 75006 42460429 ~ 42461528 (-)
G2138366 NA non-coding upstream 90047 42475470 ~ 42475859 (-)
G2138367 NA non-coding upstream 91020 42476443 ~ 42477643 (-)
G2138386 NA non-coding upstream 136891 42522314 ~ 42522784 (-)
G2138294 LOC106594920 other downstream 16792 42349216 ~ 42351452 (-)
G2137814 LOC106597294 other downstream 141279 42220922 ~ 42226965 (-)
G2137648 LOC106596196 other downstream 554043 41810795 ~ 41814201 (-)
G2137555 NA other downstream 631855 41731714 ~ 41736389 (-)
emilin2a LOC106595984 other upstream 989324 43343531 ~ 43398034 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G430067 NA non-coding CI01000306 null 449044 ~ 483614 (+)
rainbow trout (Oncorhynchus mykiss) G106143 NA non-coding NC_048566.1 CM023220.2 2756008 ~ 2756799 (+)
striped catfish (Pangasianodon hypophthalmus) G177448 NA non-coding NC_047605.1 CM018551.1 7267561 ~ 7271271 (-)
bowfin (Amia calva) G96131 NA non-coding CM030132.1 CM030132.1 4329096 ~ 4329398 (-)
tiger barb (Puntius tetrazona) G81038 NA non-coding NC_056709.1 CM032078.1 11525058 ~ 11527052 (-)
tiger barb (Puntius tetrazona) G142245 NA non-coding NC_056718.1 CM032087.1 26017371 ~ 26033198 (-)