Gene
RNA
| Item | Value |
|---|---|
| gene id | G2138598 |
| gene name | atp6v1h |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 43155077 ~ 43156881 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atp6v1h | Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2446021 | True | 481 | lncRNA | 0.50 | 3 | 43155077 | 43156881 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944838 | LOC106596014 | coding | downstream | 77617 | 43041222 ~ 43077460 (-) |
| LOC110509179 | LOC105010334 | coding | downstream | 167718 | 42973355 ~ 42987359 (-) |
| LOC110508296 | pde1c | coding | downstream | 195669 | 42877496 ~ 42959408 (-) |
| LOC110509177 | LOC106597278 | coding | downstream | 382240 | 42733643 ~ 42772837 (-) |
| LOC110508271 | NA | coding | downstream | 451957 | 42625607 ~ 42703120 (-) |
| emilin2a | LOC106595984 | coding | upstream | 186650 | 43343531 ~ 43398034 (-) |
| G2138634 | NA | non-coding | downstream | 23767 | 43130889 ~ 43131310 (-) |
| G2138601 | NA | non-coding | downstream | 70139 | 43084075 ~ 43084938 (-) |
| G2138593 | NA | non-coding | downstream | 115135 | 43038217 ~ 43039942 (-) |
| G2138543 | NA | non-coding | downstream | 233824 | 42918699 ~ 42921253 (-) |
| G2138541 | NA | non-coding | downstream | 238511 | 42908268 ~ 42916566 (-) |
| G2138650 | NA | non-coding | upstream | 30623 | 43187504 ~ 43190542 (-) |
| G2138651 | NA | non-coding | upstream | 32344 | 43189225 ~ 43191252 (-) |
| G2138653 | NA | non-coding | upstream | 38169 | 43195050 ~ 43208567 (-) |
| G2138668 | NA | non-coding | upstream | 72702 | 43229583 ~ 43230117 (-) |
| G2138670 | NA | non-coding | upstream | 75687 | 43232568 ~ 43241288 (-) |
| G2138294 | LOC106594920 | other | downstream | 803625 | 42349216 ~ 42351452 (-) |
| G2137814 | LOC106597294 | other | downstream | 928112 | 42220922 ~ 42226965 (-) |
| G2137648 | LOC106596196 | other | downstream | 1340876 | 41810795 ~ 41814201 (-) |
| G2137555 | NA | other | downstream | 1418688 | 41731714 ~ 41736389 (-) |
| LOC110509166 | LOC106596257 | other | downstream | 1523694 | 41630582 ~ 41641166 (-) |
